RnoEX6055785 @ rn6
Exon Skipping
Gene
ENSRNOG00000012448 | Chrnb3
Description
cholinergic receptor nicotinic beta 3 subunit [Source:RGD Symbol;Acc:621544]
Coordinates
chr16:68881291-68898368:-
Coord C1 exon
chr16:68898196-68898368
Coord A exon
chr16:68887548-68887592
Coord C2 exon
chr16:68881291-68881400
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTAACTGTCTCTTTCTTAGGAT
3' ss Score
11.43
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTCCTGGGTGACTCTTACGGCCACTGCAGGACTCAGCTCAGTGGCTGAACACGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTACCAGAAATGGGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAAATATCCCAGCTTGTGGATGTG
Seq A exon
GATGAAAAGAATCAGCTGATGACGACAAATGTGTGGCTGAAGCAG
Seq C2 exon
GAATGGACAGACCAAAAATTACGCTGGAATCCGGAAGAATATGGTGGAATTAATTCGATAAAGGTTCCATCAGAATCGCTCTGGCTGCCGGACATAGTTCTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012448-'3-4,'3-1,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.0=67.2)
A:
PF0293118=Neur_chan_LBD=FE(23.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCAGAAATGGGTCCGCC
R:
CATATTCTTCCGGATTCCAGCGT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]