BtaEX6107254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014050 | CHRNB3
Description
cholinergic receptor, nicotinic, beta 3 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1963]
Coordinates
chr27:37166993-37179817:+
Coord C1 exon
chr27:37166993-37167144
Coord A exon
chr27:37168327-37168371
Coord C2 exon
chr27:37179708-37179817
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTACTTTTCCTTTTCTTAGGAT
3' ss Score
11.17
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGCTGCGGGATTCAGGTCCATAGCCGAAGAAGAAGACGCGCTGCTCAGACACTTATTCCAAGGTTACCAGAAATGGGTTCGCCCCGTATTACATTCCAACGACACTGTAAAAGTCTACTTTGGATTGAAAATTTCTCAGCTCGTGGATGTG
Seq A exon
GATGAAAAGAATCAGCTGATGACGACAAACGTGTGGCTCAAACAG
Seq C2 exon
GAATGGACAGACCACAAGTTACGCTGGAATCCGGATGAATACGGTGGGATTCATTCCATTAAAGTTCCGTCAGAATCTCTCTGGCTTCCTGACATAGTTCTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014050-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.0=76.5)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCTGCTCAGACACTTATT
R:
CCAGCGTAACTTGTGGTCTGT
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]