DreEX6058985 @ danRer10
Exon Skipping
Gene
ENSDARG00000038508 | chrnb3b
Description
cholinergic receptor, nicotinic, beta 3b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-030102-4]
Coordinates
chr14:41151885-41158229:+
Coord C1 exon
chr14:41151885-41152033
Coord A exon
chr14:41155443-41155487
Coord C2 exon
chr14:41158120-41158229
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTTTATGAATTTAGGAT
3' ss Score
8.45
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CTAGAGAGTTTGTATCTCTGGCAGAAAGAGAAGATGCTCTGCTCAGGGACTTGTTTCAGGGGTACCAGCGTTGGGTCAGGCCCATTCTGCACGCAAACCACACTGTGAAGGTGCGCTTTGGCTTGAAGATCTCTCAGCTTGTGGACGTG
Seq A exon
GATGAGAAAAACCAGCTCATGACCACTAATGTATGGCTGTATGAG
Seq C2 exon
GAATGGCTGGATTATAAACTGCGCTGGAACCCTGAGAATTATGGTGGGATCACATTTATCAGAGTCCCGTCAGAGAGCATCTGGCTCCCAGACATCGTTTTATATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038508-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.0=78.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGACTTGTTTCAGGGGT
R:
CAGGGTTCCAGCGCAGTTTAT
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]