MmuEX6035192 @ mm10
Exon Skipping
Gene
ENSMUSG00000031492 | Chrnb3
Description
cholinergic receptor, nicotinic, beta polypeptide 3 [Source:MGI Symbol;Acc:MGI:106212]
Coordinates
chr8:27368711-27393409:+
Coord C1 exon
chr8:27368711-27369017
Coord A exon
chr8:27386782-27386826
Coord C2 exon
chr8:27393300-27393409
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAAACTGTCTCTTTCTTAGGAT
3' ss Score
10.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGAGAGATGTTTTTAGCCTCACAAGACCTGACAGCTCACTGGGCATCAGTGAAGTGCACTTTAAAAAACCCACACCGACGGGAGGTGACTTGTGACTATTTTCATCAGGCAGCTGGTCACGATCCCCTTGGGTTGCATCGAGGCTCTGAACCACTTGTATTTTGATTTTTTTTTGTTTTGTTTTGTTTTTTAAACCCTGCTTCTTTCCAGTTGGAAACACTGAGCTTAAAAGGAAATCGTCTCTCTGAAGCAGACGTCATGACAGGCTTCCTACGGGTCTTCTTGGCTCTCAGTGCCACTCTCTCAG
Seq A exon
GATGAAAAGAATCAGCTGATGACAACAAACGTGTGGCTGAAGCAG
Seq C2 exon
GAATGGACAGACCAAAAATTACGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACATAGTTCTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031492_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGTCATGACAGGCTTCC
R:
AGCGACTCCGATGGAACCTTT
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types