DreEX6031405 @ danRer10
Exon Skipping
Gene
ENSDARG00000055559 | chrna6
Description
cholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
Coordinates
chr1:21800652-21808348:-
Coord C1 exon
chr1:21808209-21808348
Coord A exon
chr1:21804412-21804456
Coord C2 exon
chr1:21800652-21800761
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCGTGTCTTCCTGTCTATAGGAT
3' ss Score
10.39
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTGTTTCTCGTCTAAAGGAGAAGACAGGCTCTTTCGTCGTTTATTCAGGAGGTATAATCAGTTCATTCGGCCAGTGGAAAATGTGTCTGACCCTGTTACTGTGGAGTTTGAGGTCTCCATCTCACAGCTTGTTAAAGTG
Seq A exon
GATGAAGTCAATCAGATCATGGAAACAAACCTTTGGCTGAGACAT
Seq C2 exon
ATATGGAATGACTACAAGCTGAAGTGGTCACCAGCAGAGTTTGATGGAATTGAGTTCATCAGAGTCCCATCCAATAAAATCTGGAGGCCTGACATTGTACTTTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055559-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTCTCCATCTCACAGCT
R:
AGTACAATGTCAGGCCTCCAGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]