HsaEX6076020 @ hg38
Exon Skipping
Gene
ENSG00000080644 | CHRNA3
Description
cholinergic receptor nicotinic alpha 3 subunit [Source:HGNC Symbol;Acc:HGNC:1957]
Coordinates
chr15:78617024-78618915:-
Coord C1 exon
chr15:78618776-78618915
Coord A exon
chr15:78618617-78618661
Coord C2 exon
chr15:78617024-78617133
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTTAATTCCTCTTTCTAGGAT
3' ss Score
11.13
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGGCCAGGGCCTCAGAGGCTGAGCACCGTCTATTTGAGCGGCTGTTTGAAGATTACAATGAGATCATCCGGCCTGTAGCCAACGTGTCTGACCCAGTCATCATCCATTTCGAGGTGTCCATGTCTCAGCTGGTGAAGGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAGACCAACCTGTGGCTCAAGCAA
Seq C2 exon
ATCTGGAATGACTACAAGCTGAAATGGAACCCCTCTGACTATGGTGGGGCAGAGTTCATGCGTGTCCCTGCACAGAAGATCTGGAAGCCAGACATTGTGCTGTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080644-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCTGACCCAGTCATCA
R:
GATCTTCTGTGCAGGGACACG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains