MmuEX6066066 @ mm9
Exon Skipping
Gene
ENSMUSG00000032303 | Chrna3
Description
cholinergic receptor, nicotinic, alpha polypeptide 3 [Source:MGI Symbol;Acc:MGI:87887]
Coordinates
chr9:54869986-54872234:-
Coord C1 exon
chr9:54872095-54872234
Coord A exon
chr9:54871953-54871997
Coord C2 exon
chr9:54869986-54870095
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTCAATCTCACTTTCTAGGAT
3' ss Score
10.92
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGGCCAGCGCCTCGGAAGCTGAGCACCGCCTGTTCCAGTACCTGTTTGAAGATTACAACGAGATCATCCGGCCGGTGGCTAACGTGTCCCATCCTGTCATCATCCAGTTTGAGGTGTCTATGTCTCAGCTGGTGAAGGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTGAAGCAA
Seq C2 exon
ATCTGGAATGACTACAAGCTGAAATGGAAACCCTCTGACTACCAAGGGGTGGAGTTCATGCGAGTCCCTGCAGAGAAGATCTGGAAACCAGACATCGTGCTTTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032303-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAACGAGATCATCCGGCC
R:
CCCCTTGGTAGTCAGAGGGTT
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: