BtaEX6077434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003130 | CHRNA3
Description
Bos taurus cholinergic receptor, nicotinic, alpha 3 (neuronal) (CHRNA3), mRNA. [Source:RefSeq mRNA;Acc:NM_174719]
Coordinates
chr21:31511404-31512927:-
Coord C1 exon
chr21:31512774-31512927
Coord A exon
chr21:31512616-31512660
Coord C2 exon
chr21:31511404-31511513
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTGAATCTCTCTTTCTAGGAT
3' ss Score
10.91
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCTACTTCCCTCAGTGGCCAGCACGTCCGACGCAGAGCATCGCCTGTTTGAGCGCCTGTTTGAAGATTACAACGAGATCATCCGGCCAGTGGCCAATGTGTCTGACCCGGTCATCATCCAGTTTGAGGTGTCCATGTCTCAGCTGGTGAAGGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAGACTAACCTGTGGCTCAAGCAA
Seq C2 exon
ATCTGGAACGACTACAAGCTGAAGTGGAACCCGTCCGACTACGACGGGGCCGAGTTCATGCGCGTCCCTGCGCAGAAGATCTGGAAGCCAGACATTGTACTGTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003130-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCTGACCCGGTCATCAT
R:
CTTCCAGATCTTCTGCGCAGG
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]