Special

DreEX0021693 @ danRer10

Exon Skipping

Gene
Description
cholinergic receptor, nicotinic, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070822-1]
Coordinates
chr18:50642545-50646640:+
Coord C1 exon
chr18:50642545-50642684
Coord A exon
chr18:50643819-50643863
Coord C2 exon
chr18:50646531-50646640
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTTATTTCCACAGGAC
3' ss Score
11.81
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
GGGTTTGCTGCTCTGAGGCCGAGCACCGGCTCTTCTCTGTCATTTTCTCCAGCTATAACCAGTACATCCGACCAGTGGAGAATGTGTCTGATCCAGTGGTCGTCCAGTTCGAGGTCTCCATGTCACAGCTGGTCAAAGTG
Seq A exon
GACGAGGTGAACCAGATTATGGAGACCAATCTTTGGCTGAGACAC
Seq C2 exon
ATTTGGAATGACTATAAGCTCCGATGGGATCCCAAGGATTTTGGAGGTGTTGAGTTCATCCGTGTGCCGTCCAACAAGATTTGGAAGCCAGACATTGTGTTGTATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100991-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACCAGTGGAGAATGTGT
R:
GGCACACGGATGAACTCAACA
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]