RnoEX0021198 @ rn6
Exon Skipping
Gene
ENSRNOG00000013829 | Chrna3
Description
cholinergic receptor nicotinic alpha 3 subunit [Source:RGD Symbol;Acc:2345]
Coordinates
chr8:59602852-59605159:-
Coord C1 exon
chr8:59605020-59605159
Coord A exon
chr8:59604870-59604914
Coord C2 exon
chr8:59602852-59602961
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTTCAATCTCACTTTCTAGGAT
3' ss Score
10.92
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGGCCAGTGCCTCAGAAGCTGAGCACCGCCTGTTCCAGTACCTGTTCGAAGATTACAACGAGATCATCCGGCCAGTGGCTAATGTGTCCCATCCAGTCATCATCCAGTTTGAGGTGTCCATGTCTCAGCTGGTGAAGGTG
Seq A exon
GATGAAGTAAACCAGATCATGGAAACCAACCTGTGGCTGAAGCAA
Seq C2 exon
ATCTGGAATGACTACAAGCTGAAATGGAAACCCTCTGACTACCAAGGGGTGGAGTTCATGCGTGTTCCTGCAGAGAAGATCTGGAAACCAGACATCGTACTGTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013829-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAACGAGATCATCCGGCCA
R:
CCCCTTGGTAGTCAGAGGGTT
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]