RnoEX0021209 @ rn6
Exon Skipping
Gene
ENSRNOG00000012283 | Chrna6
Description
cholinergic receptor nicotinic alpha 6 subunit [Source:RGD Symbol;Acc:69281]
Coordinates
chr16:68862027-68865369:+
Coord C1 exon
chr16:68862027-68862166
Coord A exon
chr16:68863223-68863267
Coord C2 exon
chr16:68864394-68865369
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATATTATTTCTCCCTTCCAGGAT
3' ss Score
12.09
5' ss Seq
CACGTAGGT
5' ss Score
6.85
Exon sequences
Seq C1 exon
GCAGTAGAGGCTGTGTGTCTGAGGAACAGCTCTTCCACACACTCTTCGCCCACTACAACCGCTTCATCCGGCCAGTGGAAAACGTTTCTGATCCCGTCACGGTGCACTTTGAGTTGGCCATCACGCAGCTGGCCAATGTG
Seq A exon
GATGAAGTCAACCAGATTATGGAGACCAATCTGTGGCTGCGTCAC
Seq C2 exon
TGCCGTCGGCGACTTCCAGGTCGAAGGCAAGACCAAAGCTCTTCTTAAGTACGATGGGGTGATAACCTGGACCCCGCCAGCCATCTTTAAGAGTTCCTGTCCAATGGACATCACCTTCTTCCCATTTGATCATCAAAACTGCTCCCTGAAATTTGGGTCCTGGACTTACGACAAGGCTGAAATCGACCTTCTCATCATTGGCTCTAAAGTGGACATGAACGACTTTTGGGAAAACAGTGAGTGGGAAATTGTCGATGCCTCTGGCTACAAGCATGACATCAAGTACAACTGCTGTGAAGAGATTTACACAGATATCACCTACTCGTTCTACATCAGGAGACTGCCCATGTTTTATACCATCAATCTCATCATCCCCTGCCTCTTCATTTCCTTTCTCACCGTGCTGGTCTTTTACCTTCCTTCCGACTGTGGCGAGAAAGTGACTCTTTGCATCTCGGTTCTGCTTTCTCTAACTGTCTTTTTGCTGGTGATTACAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012283_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=35.3),PF103294=DUF2417=WD(100=51.5),PF0293211=Neur_chan_memb=PU(86.0=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTTCGCCCACTACAACC
R:
CTTGCCTTCGACCTGGAAGTC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]