GgaEX6050565 @ galGal3
Exon Skipping
Gene
ENSGALG00000015382 | F1NKI5_CHICK
Description
NA
Coordinates
chrZ:52487953-52491472:+
Coord C1 exon
chrZ:52487953-52488092
Coord A exon
chrZ:52490242-52490286
Coord C2 exon
chrZ:52491363-52491472
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTGTTTCTTTCTAGGAT
3' ss Score
12.87
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACACCACAGCCTGCGAGTCAGAGGAACGGCTGTTTCACAAACTCTTCTCCCGCTACAACCAGTTCATCAGGCCGGTGGAAAACGTATCTGATCCTGTCACGGTGCATTTCGAACTGGCCATTACCCAGCTTACAAATGTG
Seq A exon
GATGAAGTCAATCAGATTATGGAAACCAATTTGTGGCTAAGACAC
Seq C2 exon
ATCTGGAATGACTACAAATTGCGATGGGATCCCAGAGAATATGATGGAATTGAATTTGTTCGGGTACCAGCAGATAAAATTTGGAAACCAGATATTGTCTTATACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=92.9)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTGGAAAACGTATCTGA
R:
TCTGCTGGTACCCGAACAAAT
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]