GgaEX6050565 @ galGal4
Exon Skipping
Gene
ENSGALG00000015382 | CHRNA6
Description
neuronal acetylcholine receptor subunit alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990695]
Coordinates
chrZ:53428011-53430701:+
Coord C1 exon
chrZ:53428011-53428150
Coord A exon
chrZ:53429472-53429516
Coord C2 exon
chrZ:53430592-53430701
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTGTTTCTTTCTAGGAT
3' ss Score
12.87
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ACACCACAGCCTGCGAGTCAGAGGAACGGCTGTTTCACAAACTCTTCTCCCGCTACAACCAGTTCATCAGGCCGGTGGAAAACGTATCTGATCCTGTCACGGTGCATTTCGAACTGGCCATTACCCAGCTTACAAATGTG
Seq A exon
GATGAAGTCAATCAGATTATGGAAACCAATTTGTGGCTAAGACAC
Seq C2 exon
ATCTGGAATGACTACAAATTGCGATGGGATCCCAGAGAATATGATGGAATTGAATTTGTTCGGGTACCAGCAGATAAAATTTGGAAACCAGATATTGTCTTATACAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.8=83.0)
A:
PF0293118=Neur_chan_LBD=FE(6.8=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTGGAAAACGTATCTGA
R:
TCTGCTGGTACCCGAACAAAT
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]