HsaINT1007756 @ hg38
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33592395-33594968:-
Coord C1 exon
chr3:33594951-33594968
Coord A exon
chr3:33592497-33594950
Coord C2 exon
chr3:33592395-33592496
Length
2454 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTAAATATTTTATTTCTCAGGCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GAACAGCATCTGAAGATG
Seq A exon
GTAAGAACTATACATTTTGTTAGTAACACAAATACATCTACATTACTATTTTCATTGGTAGGAATTAAATATTAGAACTAAAATAGGCTAATTTCTTTGCAACTCTTTATAATTTGCCAGTTGTAGTAAGTTCTACATTTCATATTTGGTTGTCTTAGTAATGTGTGGATTTTTTTTTTTTAATTCTTCATCCTGCTGGTTTGCTTTGTACTTTGGATCATCTCATGCTGGAAAAACATAATTGCTTAACATGTTTAATAATATCTAGTATGAAGTAAGCATATAATTCATTTTTTATAGTAGTGACATTAATGCTTTTCTTACATGTTTGTGTTTTTGTTTTTTTATTTATGCCAATTCATTTATACTTTGAGAGATCATGCACCATTGTTTTATCATTGAAGTTTTAAATGCATTTACTTAGTCTGCTTTTAAATATGTCTTCTACTTTTGAATCAGTAACTGGGGAGTTGGTCACAGATTCAAATTGAATTTGAGATTACACCAGAATTGCTATACATATCTTACTGAGCTAGTTCACCTTAAAAATAATTTTTATAGTTTTCAATTTGTAGAAAGGAAAGTAATTCAATGTTTATATTCACTCTACCTGAAGTCTGTCTTTTTAAAACCTCCGATTCAAAATATAAATTTTTTTCCTCTAAGTTTTACGTGGATGACTATTTTTTGTGACACAAAACCAAATAGATTAACTTTTTTATTTGGTCTCATATTTACTCTGATATATTTAAAATAATTTTGTATTTTAAGTTTTAAATTGGAATACTGTATAAAAACATGATTTCTGTCCAGGCATAGGGGTTCACACCTGAAATCCCAGCACTTTGAAAGGCTGAGCTAGGAGGATTGGTTGAATCCAGAAGTTTGAGACCAGCTTGGACGACATAGTGAGAACCCATCTCTACAAAAAATTTTAAATTTAGCTGGGTGTGGTGGCACCGTCCTATAGTCCCACCTATTCTGGAGGCTGAGGTGGGAGGACCACTTGAGCCTGGGAGATTGAGGCTACAGTGAGCCATGATCATGCCACCGCACTCCAGCCTGGGCAACAGAACAAGATTGTGTGTCAAGAAATAAATAAAAATAAAAACATGATTTCTCGCACTGTGGAATTGTAATTTCAAATGTTAATATCAAAATACTTAACATACTCTCATTTCTTTGTTATATACAATGTAGATAAATTCTCCATTTCAAAAATAATAATTTGGTCATTTTGTTTTACTTTTTAGTCAAGAGAACTTTGTGTCCTGCTCAAAATAGACTGTAAAAGGGTGAGAGGCCTGAACCATGGGCTCATTAGGGGCCTTGAAGTTGATAGTATGCTGGTATTCTACCAATTAAACTTCTGGTTTTGATTCTGTTTTATTCCTAGTTCTTATTACTCTCTTATCTTTTCTCACTCATTTCTTAATTTTGTAATATCTCCTTATTCTTTGAGTTTTTATTCTTATTATTTAGTATGTTTTTTCCTAATTAATATGGTCATATTGGGCTAGCCAGTATTTCATGTATACCCTACAAATTGTATCTTTTATCTAAAAATAATTCTGAGCCCTTCTTTTTGAATGACAAACCTTATTGGTTCTGATTTGATAGCAGTTGAGACTATTGCTTAAGAACACCAAAGTACCCACCAATAATATATTCTGTCCTCACTTATTTTTATTAACTGCAGCTAACTTAAGCACTTGACAGACATGCTGCTTGTAGTTCAAGAGCCCTAGAAATAGGGTGAGGATGTTTGTGGCCTAGTTTTGTGGAGGGGAATGAGGCAGAGTGGTAGAATAGAAAGGAGTGCAGTTCGGGAGGTATGAAAAGAAATATATTGAGAAAAATGCTAACTCTTATGTGATATGTATTTCCTCAAATCACTTTCTAAATGAAATAGTTGATTGGAGGAAGAGAGCAGTAAACATGTCCATATACCATATGTAGTAATCTGATATAAAGAGATTAAATCTTTTGCCTAATTATATCTCTTCCTTCAGATCCCTTTAGAAGTACATTTTCAGTCAAAAGGATGGTTTGAATTGTTTCCAAGCTTAGGCTTATATTTAAAACTGTAGGGTTGACTTGAGAATAATCTGAACTTCATGGAAACTGAAATTTCAGAATTGCAACTACCAATTGAGAAACAAGTGACATGCTTATGGTGATTATCTTAATTGTAACTGCTGGACTAATATATAAACTAAGAATGTAAATCTTTTAGTTTGATTCTTCTTATCCTTGAAGGAAAATTAGCTTATGGTATAACACGTAAAAAAAAAATTACTGTTTATAAAATTTTTAAGAGAAATAGAACCCGTAATTGATGATTACATTATTACAGAATTTGGCAGTACCTAAAAATAGTGAGATTTTCTCCTCTCATTATTAAACATTATTATAGAAAAATGTTTTTAATTATGTAAATATTTTATTTCTCAG
Seq C2 exon
GCCGGGTGAGAGCAAAACTTTCAGCACCACTTGCTGGCATGGGAAATGCCAAGGCAGATTCTAGAGGAAGAAGTCGAACAAAAATGGTGTCTCAATCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539:ENST00000468888:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains