MmuINT0036757 @ mm10
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113860120-113862287:+
Coord C1 exon
chr9:113860120-113860137
Coord A exon
chr9:113860138-113862185
Coord C2 exon
chr9:113862186-113862287
Length
2048 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTAAATATTCGTTCCTCAGGTC
3' ss Score
8.23
Exon sequences
Seq C1 exon
GAACAGCATCTGATGATG
Seq A exon
GTAAGAAGTCAATACTTTGTTAGTAACACAGACCCTTCACCTCACAGTTTCATTGGTAGAATGCATTGAAACTAAAACAGGCTAATTTACCTGCAGACCCTTCTCATTTGCCAGCTGTGGTAGCTTTTGCATTCTATATTTGGTTGTGTTCATTGTGTGTAAAATCTTTTTTTAATTCTTCATCATGCAGTTGTGCTTTATACCCTGGATCATCTCATTCTAGAAAAACATTGCTTAACATACTTAATCATATCTAGTATATAATTCCATTTTTCCCAGTAATGACAACAGAATTTTTTTTTTCTTTTCTAAAAGAATTAATACCAGGTTATTTCTGCTTCTTAGGAACATTGGACATTAAAAACTTTCATTTCATCTATTTTGAAATGTATCTTTTAATTTTTGAATCAGTGACTACAGAATTGGTCTCTGATTCCAATTCAGTTTAAGAGTATAACTACTTGCTACACAGACTCTTCTAGTCAGTTGACATTAAAAGAAATAGTCCTTCAGAGTTTATAGAAATAAGAATTCAGTTTTTGTATTTATCCTTCCTGAAGGATAAATCTCATTAAAGCCTTTTTTTTTTAAACACAATATTTTTCTTAAGTTTGACATGAACAACATTTTCTTGAGTATAAAACCAAATGCATGTAATTGTTTTGTTTTTATATTAACTGTGGTGTGCTTGAAATGGTGTTAAGTTAAAACTGTATTACTCGAAAAATCAGTTCTGATACTGAATGAATGGCAGCTTACTTTAGTACTTTGAACTTAAAGCATTAGTATGTGGCTAGAATATAGGTGGAGTCTTTATTCAGTTTCTCTGCACTGTTCTTCAGTTATGAGGAAATTATGACCTACCCAGAGCAGACTCCTAAAGCCGAGGGCTCTGCAGCGTGGGCTCCTGGGGCCTTGCTGGTGATGCTCTCTTGGCATCTGCCTCCGATTCACTCCCAGCTCCCACCGCTCCTCTGACTTCACCTAGTCCTCTTGCTCAAATCCAGCCCTCCTCTTCAGCACCTGCTTTTCAAATCAGGATGGTCAAATTGGTCACTATCTTGGGATTCCCTAAAATTGTCCCTCTTAATGTACATAGATTCTAAATGCTTTTTTCCCTCTGTGTTCAACATGATGTGATGTGCTTGTGAGTGTCGCTGGAGAGCCCAGAGCACCTAGCAGTGGGGTGTGACCGTCCCTCATCTTTACTGCTGGCAGCTTACGCAGATGCGTTAGTGCAAGTGCTCTAGAAAGGGCCTGCTCGGGTGGCAAGCACCTTTAATCAGGCATATCTCAGTGTGTTCGAGGCCAGACTGCTCTACAGTGTGAGTTCCAGCAGGACCAGAGATCCTGCCCCATACCTCTAACCAAAATGAACAAAACCAAACCTCTGGAAATACAGTGAAAATATTTGTCGTGTGGTTTTACCTCGGGGACGAGATGGAGGTAGCGGTGAAAGGAAGGATCTAGGAAGAAGAGATTAAAAAAAAAGATGACTTGGCTGATGGCAGCGCTTCTTCAGAAGTACACTGTCCACCAAGAAGACTGTTTACAGTCTTGTTTAGCTCTAAAGCTATGGCACACATTTGAAAACAGTCCTAATTTTCTAGAAACAGGAACTTTTTTTAAAATTTTGTTTTGTGTTCTTATCTTTTGAGGGTCTCATGTAGAACAGGCTGGTCTAGAACTCAAAGAGATCCTCCTGCCTCTGCCTACCAAATTCTAGGATCAAAGGTGTGTGCCACCATGTCTGGCAATTTTCTTCTTATGTAGAACATGTATAAAGAAGTATATATCTGGGTTTGATGATATACAGGTTGTAGTCCCAGATACTTGAAAGATAAGGCAGGAGAATTTCCTAAGCCTAGGTGAGATGTTATCTTAGAAAGTAAACTCCAAACTGTACTTTTAAATTCTTAAGAGAAATATATAAATAATGGCTGCCTTACTTCAGAATTAAAAATATTTGAAAATAGTGTAAGTCCCCTTTCTTAATACTAAATACTATTGTAGGAAGTGTTTTAATTGTGTAAATATTCGTTCCTCAG
Seq C2 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCGCTTGTTGCTGTGGGAAATGCCAAGACCGACTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392:ENSMUST00000111838:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types