HsaINT0035759 @ hg19
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33633887-33636460:-
Coord C1 exon
chr3:33636443-33636460
Coord A exon
chr3:33633989-33636442
Coord C2 exon
chr3:33633887-33633988
Length
2454 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
GTAAATATTTTATTTCTCAGGCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GAACAGCATCTGAAGATG
Seq A exon
GTAAGAACTATACATTTTGTTAGTAACACAAATACATCTACATTACTATTTTCATTGGTAGGAATTAAATATTAGAACTAAAATAGGCTAATTTCTTTGCAACTCTTTATAATTTGCCAGTTGTAGTAAGTTCTACATTTCATATTTGGTTGTCTTAGTAATGTGTGGATTTTTTTTTTTTAATTCTTCATCCTGCTGGTTTGCTTTGTACTTTGGATCATCTCATGCTGGAAAAACATAATTGCTTAACATGTTTAATAATATCTAGTATGAAGTAAGCATATAATTCATTTTTTATAGTAGTGACATTAATGCTTTTCTTACATGTTTGTGTTTTTGTTTTTTTATTTATGCCAATTCATTTATACTTTGAGAGATCATGCACCATTGTTTTATCATTGAAGTTTTAAATGCATTTACTTAGTCTGCTTTTAAATATGTCTTCTACTTTTGAATCAGTAACTGGGGAGTTGGTCACAGATTCAAATTGAATTTGAGATTACACCAGAATTGCTATACATATCTTACTGAGCTAGTTCACCTTAAAAATAATTTTTATAGTTTTCAATTTGTAGAAAGGAAAGTAATTCAATGTTTATATTCACTCTACCTGAAGTCTGTCTTTTTAAAACCTCCGATTCAAAATATAAATTTTTTTCCTCTAAGTTTTACGTGGATGACTATTTTTTGTGACACAAAACCAAATAGATTAACTTTTTTATTTGGTCTCATATTTACTCTGATATATTTAAAATAATTTTGTATTTTAAGTTTTAAATTGGAATACTGTATAAAAACATGATTTCTGTCCAGGCATAGGGGTTCACACCTGAAATCCCAGCACTTTGAAAGGCTGAGCTAGGAGGATTGGTTGAATCCAGAAGTTTGAGACCAGCTTGGACGACATAGTGAGAACCCATCTCTACAAAAAATTTTAAATTTAGCTGGGTGTGGTGGCACCGTCCTATAGTCCCACCTATTCTGGAGGCTGAGGTGGGAGGACCACTTGAGCCTGGGAGATTGAGGCTACAGTGAGCCATGATCATGCCACCGCACTCCAGCCTGGGCAACAGAACAAGATTGTGTGTCAAGAAATAAATAAAAATAAAAACATGATTTCTCGCACTGTGGAATTGTAATTTCAAATGTTAATATCAAAATACTTAACATACTCTCATTTCTTTGTTATATACAATGTAGATAAATTCTCCATTTCAAAAATAATAATTTGGTCATTTTGTTTTACTTTTTAGTCAAGAGAACTTTGTGTCCTGCTCAAAATAGACTGTAAAAGGGTGAGAGGCCTGAACCATGGGCTCATTAGGGGCCTTGAAGTTGATAGTATGCTGGTATTCTACCAATTAAACTTCTGGTTTTGATTCTGTTTTATTCCTAGTTCTTATTACTCTCTTATCTTTTCTCACTCATTTCTTAATTTTGTAATATCTCCTTATTCTTTGAGTTTTTATTCTTATTATTTAGTATGTTTTTTCCTAATTAATATGGTCATATTGGGCTAGCCAGTATTTCATGTATACCCTACAAATTGTATCTTTTATCTAAAAATAATTCTGAGCCCTTCTTTTTGAATGACAAACCTTATTGGTTCTGATTTGATAGCAGTTGAGACTATTGCTTAAGAACACCAAAGTACCCACCAATAATATATTCTGTCCTCACTTATTTTTATTAACTGCAGCTAACTTAAGCACTTGACAGACATGCTGCTTGTAGTTCAAGAGCCCTAGAAATAGGGTGAGGATGTTTGTGGCCTAGTTTTGTGGAGGGGAATGAGGCAGAGTGGTAGAATAGAAAGGAGTGCAGTTCGGGAGGTATGAAAAGAAATATATTGAGAAAAATGCTAACTCTTATGTGATATGTATTTCCTCAAATCACTTTCTAAATGAAATAGTTGATTGGAGGAAGAGAGCAGTAAACATGTCCATATACCATATGTAGTAATCTGATATAAAGAGATTAAATCTTTTGCCTAATTATATCTCTTCCTTCAGATCCCTTTAGAAGTACATTTTCAGTCAAAAGGATGGTTTGAATTGTTTCCAAGCTTAGGCTTATATTTAAAACTGTAGGGTTGACTTGAGAATAATCTGAACTTCATGGAAACTGAAATTTCAGAATTGCAACTACCAATTGAGAAACAAGTGACATGCTTATGGTGATTATCTTAATTGTAACTGCTGGACTAATATATAAACTAAGAATGTAAATCTTTTAGTTTGATTCTTCTTATCCTTGAAGGAAAATTAGCTTATGGTATAACACGTAAAAAAAAAATTACTGTTTATAAAATTTTTAAGAGAAATAGAACCCGTAATTGATGATTACATTATTACAGAATTTGGCAGTACCTAAAAATAGTGAGATTTTCTCCTCTCATTATTAAACATTATTATAGAAAAATGTTTTTAATTATGTAAATATTTTATTTCTCAG
Seq C2 exon
GCCGGGTGAGAGCAAAACTTTCAGCACCACTTGCTGGCATGGGAAATGCCAAGGCAGATTCTAGAGGAAGAAGTCGAACAAAAATGGTGTCTCAATCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539-CLASP2:NM_015097:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)