HsaINT1007861 @ hg38
Intron Retention
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155264468-155264774:-
Coord C1 exon
chr1:155264645-155264774
Coord A exon
chr1:155264551-155264644
Coord C2 exon
chr1:155264468-155264550
Length
94 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCCCTCCCATTCTCACCCAGAGT
3' ss Score
7.88
Exon sequences
Seq C1 exon
AAGCGAGATGAGCGCAGTGTGAAGAGCACAGCTGTGCGGGTGGTAGACTTTGGCAGTGCCACCTTTGACCATGAGCACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCACCAGAAGTCATCCTTG
Seq A exon
GTAAGGGAGGGCAAGGCTGTCCAAGTGTGTGAGATGATGTGAGGGTGGGGCCACCTAAGCCTCATAACACCTTTTCCCTCCCATTCTCACCCAG
Seq C2 exon
AGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGTATAGGCTGCATCATCTTTGAATACTATGTGGGATTCACCCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444:ENST00000368361:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAGCGCAGTGTGAAGAG
R:
GCAGCCTATACTCCACACATCAC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains