RnoINT0037388 @ rn6
Intron Retention
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188486866-188487171:+
Coord C1 exon
chr2:188486866-188486995
Coord A exon
chr2:188486996-188487088
Coord C2 exon
chr2:188487089-188487171
Length
93 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCCTCCCCCTCACTGCACAGAGT
3' ss Score
9.12
Exon sequences
Seq C1 exon
AAACGAGATGAACGCAGTGTGAAGAGCACAGCTGTGCGGGTGGTGGACTTCGGCAGTGCCACCTTTGACCATGAGCACCATAGCACCATTGTCTCCACTCGCCATTACCGAGCCCCAGAAGTCATCCTGG
Seq A exon
GTAAGGGAGCTCAGGACTGCCCAGTGTGCAGTGGTGTGAGGAGGGGGCGTATCCTAGGCATCACACTACCTCTCCCTCCCCCTCACTGCACAG
Seq C2 exon
AGTTGGGCTGGTCACAGCCGTGCGACGTGTGGAGCATAGGCTGTATCATCTTCGAGTACTACGTCGGCTTCACCCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500:ENSRNOT00000027793:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGATGAACGCAGTGTGAA
R:
CTATGCTCCACACGTCGCAC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]