GgaINT0030409 @ galGal4
Intron Retention
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1975494-1975809:-
Coord C1 exon
chr10:1975680-1975809
Coord A exon
chr10:1975577-1975679
Coord C2 exon
chr10:1975494-1975576
Length
103 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TAGCTTTATTCTCTTTGCAGAGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAATCCATCCGGAACACGAGCATCCGCGTGGCAGACTTCGGAAGTGCCACCTTTGATCATGAGCACCACACCACTATCGTGGCTACCCGGCACTACCGTCCCCCAGAAGTGATCCTTG
Seq A exon
GTGAGTGCTGTTGGAGCTGCAAGAGCCTCAGTTCCATCAGGGAGCTAGTGGAAAGCTGCTGGGATTTACTGGGAGCACAGACCTAGCTTTATTCTCTTTGCAG
Seq C2 exon
AGCTGGGCTGGGCGCAGCCATGCGATGTCTGGAGTACTGGCTGCATTTTGTTTGAGTATTACCGTGGCTTCACGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362:ENSGALT00000002079:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGAGAAATCCATCCG
R:
GTGAAGCCACGGTAATACTCA
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]