RnoINT0037400 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62530108-62530875:-
Coord C1 exon
chr8:62530746-62530875
Coord A exon
chr8:62530191-62530745
Coord C2 exon
chr8:62530108-62530190
Length
555 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTTACCATCTTGGCTTACAGAGC
3' ss Score
8
Exon sequences
Seq C1 exon
AGCTGCGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCAGACTTTGGCAGTGCCACATTTGACCATGAACATCACACCACCATTGTCGCCACCCGGCATTACCGCCCACCTGAGGTGATCCTTG
Seq A exon
GTGAGTGTGCTTCCTAGTCTTCAATATTGTTTACATTGGGCAGAAATCAAAATGAACAGCTGGGGGGAGGGGGGGGGCGGGCCTGGAGAGAGATGGCTCAGTGGTTAAGAGCATTAGCTGCTTTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACCACATGGTGGCTCATAATCCCATAATGAGATCTGGTGCCCTCTTCTGGCCTGCAGGTATACATGGATGCAGAAAACTGAATATATAATAAATATAGCTTAAAAAAAAAAATAGCTGGATGTGGTGGCATACACCTGTTATCTAAGTCTTTAAAAGGTAGAAGAACAGATCAGATCAGTTCAGGCCAGCCCTGGGCTACCCAAGATCCTATTTCAAAATGAGGCAAGTGGTGGTAAACAGTCTGCCATTTAGGCCTAGACAATACCTAAGATGAGGTAGACTTGGTCTTAGGCAGAAACAGCCTTGTCAGTGGGGCTTGAACAAGAGTTCTGCCAGACAGACGTGTAGCTTCCTAGGAATTTTGGGTATAAGGTCTCATATCTTACCATCTTGGCTTACAG
Seq C2 exon
AGCTGGGCTGGGCACAGCCCTGTGATGTCTGGAGTATCGGCTGCATTCTCTTTGAGTACTACCGTGGCTTTACACTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.6=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGGAGAAGTCAGTGAAGA
R:
GGAAGAGTGTAAAGCCACGGT
Band lengths:
208-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]