HsaINT0036456 @ hg38
Intron Retention
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74627539-74628052:+
Coord C1 exon
chr15:74627539-74627668
Coord A exon
chr15:74627669-74627969
Coord C2 exon
chr15:74627970-74628052
Length
301 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTCCCCATCTTGGCTTGCAGAGC
3' ss Score
8.99
Exon sequences
Seq C1 exon
AGCTGTGAGGAGAAGTCAGTGAAGAACACCAGCATCCGAGTGGCTGACTTTGGCAGTGCCACATTTGACCATGAGCACCACACCACCATTGTGGCCACCCGTCACTATCGCCCGCCTGAGGTGATCCTTG
Seq A exon
GTGAGTGACTGTATGGCCTGTGACCTTGTCATACTGGACTGTTGTTGGGAGGGTATGAGCAGAGGCAGTGGCATGCCTGTCATTCTCTGCCACCCAGGGCAGGCAGAGTTTCTCAGACCAAGGGGCCAGTGTCATGAGACACAGGTGACTGACCTGGCTTTATCTGTCAGCCTTACTGAGAGAGGGCCTCGTACTGGGATTTGGGCAAGAGTCCTGCCAGCCGGTGTGGTGGCTGCCTTGTGACTTCCAGGCTGGAAGCATAAGGCCGGATCTCACAGCCTCTCCCCATCTTGGCTTGCAG
Seq C2 exon
AGCTGGGCTGGGCACAGCCCTGTGACGTCTGGAGCATTGGCTGCATTCTCTTTGAGTACTACCGGGGCTTCACACTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335:ENST00000345005:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(25.3=86.4)
A:
NA
C2:
PF0006920=Pkinase=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGAGGAGAAGTCAGTGA
R:
GAGTGTGAAGCCCCGGTAGTA
Band lengths:
207-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development