HsaINT1008033 @ hg38
Intron Retention
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164841156-164842025:-
Coord C1 exon
chr2:164841957-164842025
Coord A exon
chr2:164841247-164841956
Coord C2 exon
chr2:164841156-164841246
Length
710 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GCCGGCCTCTCCCACCCCAGCAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
CACTTATGTGCGGCCGTGCTGCAGAGGCGGCGGCGAGCTCCCGGACTCCGGGCAGGGAAATGGGGCAGG
Seq A exon
GTGAGTGAGAGAGCGGGCTCCAGCGAGGCCCCCAGCGCCCAGCCAGCGCCCGCACCCCGCCCGCGGGACAGGGGAGGTGCTGAGTCGGCCCTGCCCGCGCTGGGCTGAGCCTCGCAGGGGTTGCCGCTTCTCCATTCAAGTCCTGGCTTGAGAGCCGAGCGGCAAGAGCGCGGGCCGGGGAAGGGAAGAGTAGGAGAGGAAGCCGCGAGGGAGAACAGGCGAGCTACTGTCTCCTTTGGAAAAGAACGTAGGAGCCTTGGGTGGGAAAAGAGAGATCAGCCCTCCCAACTTCTCTTCGGGAAAAGTTTTCCTAGGGCGTTTTGTTTGTGCAAACTCGGCCGGAGGAGCCTGGGAGTGCGCTGCCGGCGTGGCAGCGGTGCCCGTGCGCCCGGCCCCGCTCCTCCTCCTTTTCCAGCCCCGGCGGCTCCTCTCCCTCCGAGAGGCGCCAAATGGCTACCCAGTAAACCCCACGGGGCGGGGGCTGCAGCGCCACCGCCTCCTCCGCCGTGCTCTGGGCGCCCGCTAGACCTTGTAGAGACGGCGGCGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCGGGCTCTTGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAG
Seq C2 exon
CAGTGACGCGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438:ENST00000409184:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.997
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains