HsaINT1008898 @ hg38
Intron Retention
Gene
ENSG00000275665 | CTB-58E17.9
Description
NA
Coordinates
chr17:38716507-38719267:-
Coord C1 exon
chr17:38719115-38719267
Coord A exon
chr17:38716717-38719114
Coord C2 exon
chr17:38716507-38716716
Length
2398 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTGTGCTTCTTCTCCTTCAGGCC
3' ss Score
11.11
Exon sequences
Seq C1 exon
ATCCACCGCCCAATTCCTTTCCTGGGATCTTCAGAGTTATAGAAATTTGAGGTCAAGACAGACCTGGATTGAACTTAAACCTGACATCAACTTTTGTGACCTTGGGCTCCTAACCAGCCTCTCCGAAGTGACTGTTATTAAGATTAAAAGAAG
Seq A exon
GTAATAAATGTGAAGTGTTTACCTGAAGGGTTTAGCTAGCATGTAGCAAGCCCTTAATGACTGCAGCTATTATCATAATTAGCTCTGTATGACTTTTTACATTCATCAGATCCCTTATCAGGAGGCAAAACTAAAACTCTTCCTTGGGCCACAGAATCCTGATCTGAGTTTTAACAAATATATCACCCTACTCTGTCGTTCTTAAACGTGGAATCATATTTGTCCCCTTTAAGGCTTACCTGAGTCGGCAGCCTGGCTGTAGGCCCCGCCTCCCAGCCTGACAGGTGGTCTCCCTGCACCAATTAGCTTTCTGGGGCTGGGCTGACTCTCCAGGGAGAGGGCGGGGCGCTTGTGACCCGCCCCCTTAACTCGTAAATACCCGGAGAGGTTGAGACCTCCGTAAGCGCTGATCCCAAGACACACTACGAAGCCAAGGGGAAGCACGCTACACCGGTGAAAGCACTGGGCTTGGAGTCAGGAGAACAGAATCTGAGCTTTAGGTCTGCCATTTCCTGCCTTGAGCAAGTCTTCCATCTCTGCCTTTTTCTTCTGTGAGATGGAGCAGTAACTTCCCTGCCCTGCCTTCTCGCTGGGTTCTAACTTGAAAGTGTACCCTGGTTTGCTGTGTGTGGATTTTTTTTTTTTTTAAGAGACAGGTTCTCCCTGTGTTGCCCAGGCTAGTCTCCTGAGTAGCTGGGATTACAGGCGGGAGCCACTACGCTGGGATTTTGTTTGTTTTGAGACGGAGTTTTGCTCTTATCGCCCAGGCTGGAGTGCAATGGAGCGATCTCGGCTCACTGCAACCTCCGCCTCCCACGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCCACCACCACGCCCAGCTACTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGATCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACACCCGGCCTGTTTGTTTTTGCAGGGAGGGCAATGGCCAGAGGGAGGGGGCAGCCAGAAAGCTCTCCCATTCTTTCTGGGGTCACATGCAGGTGATGGGTGTCCGACCTTTGGGAAGAAAGGGGAGAGGGGATCAGATATTCACATACCTGTGTGGCTGCTCTCAGCTTGGGAGAGGAGGGGATTAACGGCACCCATGGGGGTTCCAAAGATGTGGGTAGAAGGGAGGCTAAAGGTAGAGCCAGCCAGAGAAAACACCTAAGGGAGGGAGGTAGAATCCCCTGGCGGTTATTCTTGGATCTAGAGCACAACTGTGTGTACCGGGGTGCAGGGGGCCGGGTGTGCTGGGGAGCAGAGGGGTCCAGAGCCCGGAGGGTGGTCTGATGGCAACTCAGCCCAGTTGCTCCAATTCCCATGGAAGGCTGGGGTCCTCTGTCAGTCTGTCCCCAACCTGCCCAGGGAAGGAGGAGCCCAGGAGTCAGGTCTCACCTGAGTGGTGGAGATAGAAGCAGAAGAGGAGGGGAGGGTGCTGGTGAACGGGGAGCGGCTGAGGCGGGGCAGGGCCGAGGTCCCTGGGGGCCCCAGGAGGCTGGAGGAGAGAGGGGTGCTGCAGACAGCCCGCAGCATCCCGCCACTGTGGGAGATGGGGTCCTTATTACTGGTGTAGATGCCTGCAGGCACAAGGACAGAGGGAAGCACGTGGTTACTCTCCACCCCAGACTCCTGCTCAGCCAGGTGGCTGACAGCCCCTCCCCAGCTCGAGTGCTCCCCGGGATCTGGCTACATGCCCCAGTCTAACCCTCTTGCTGCAAAGATGTCACTTCCTGCCTGGGTGACATCTGCTTGCTGCGCCTGCTTGTTAAACTGCCCTGCCGAGGGCTACAGAATTCCTAGCTTTTCTAATCTCCCTCCCAAAACTTGGTAAAACCTTCTGACAATCTGTCCCCAATCCTTTCTACTCCACGCATGCAGAGGGGGATGTCCTGAAGGTGACTGTCTCCTCCGTGCTCTATCTTTTGGAGTGGTATCCATCCCATTTCCTTCTAAGTGCATGTGTAAGCTCTGTTCCTCACTAGACTGGCTGGGCCCTGAAATGCCCTCTGTCCCCAGGGGTCACTAACCTGCCCCTAGTAAGGGGGACTCCAGGCTCAAGCTGGGCAAGCTCCCAGAAGGCCCAAAGGTTCGGGAGGACAGACCTCCCAGGCCGGAGCTGACCAGGGAACCTCCAGAGAAGGGTGAGGCAGCAGTGGCGGTAAAGCCAGCCAGCTGGGCACTGGGCAAGGATGGGGCAGCTGGGCCCCCAGTGCCCTCCTTGTTCCGGCTGCCCTTGGGACGGCCTGGCCCATGGCGGCTCCTCTTGCTGGCTTTGTGCTTCTTCTCCTTCAG
Seq C2 exon
GCCTGTCTCAGGGGTCTCATCAGCAGGCACAGGGGTGGCACTCAGTGCGGGCATCCGTTTGTGGGTGCCTGCCGAGGCCCCAGACCCCGTGACGTGGGGAGACTTATAGTCCCCAGGGGAGGGCGCCCGGGCCCGGCCTGAGCTGGAGGTGGTGGTGGAGAAGCGCATGATGGGCCCAAAGCCAGAGAAGACCACCTTCTGCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275665:ENST00000620144:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains