HsaEX6022277 @ hg38
Exon Skipping
Gene
ENSG00000275023 | MLLT6
Description
MLLT6, PHD finger domain containing [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr17:38717432-38719583:+
Coord C1 exon
chr17:38717432-38717613
Coord A exon
chr17:38717845-38717953
Coord C2 exon
chr17:38719517-38719583
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTCTACCTCCCTCCCTTAGGTG
3' ss Score
10.87
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCATCTACACCAGTAATAAGGACCCCATCTCCCACAGTGGCGGGATGCTGCGGGCTGTCTGCAGCACCCCTCTCTCCTCCAGCCTCCTGGGGCCCCCAGGGACCTCGGCCCTGCCCCGCCTCAGCCGCTCCCCGTTCACCAGCACCCTCCCCTCCTCTTCTGCTTCTATCTCCACCACTCAG
Seq A exon
GTGTTTTCTCTGGCTGGCTCTACCTTTAGCCTCCCTTCTACCCACATCTTTGGAACCCCCATGGGTGCCGTTAATCCCCTCCTCTCCCAAGCTGAGAGCAGCCACACAG
Seq C2 exon
AGCCAGACCTGGAGGACTGCAGCTTCCGGTGTCGGGGGACCTCCCCTCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275023-'32-51,'32-44,33-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.338 C2=0.717
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGTAATAAGGACCCCA
R:
TGGAAGACAGACTCTCCTGAGG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains