MmuEX6089272 @ mm10
Exon Skipping
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97674438-97676205:+
Coord C1 exon
chr11:97674438-97674619
Coord A exon
chr11:97674774-97674882
Coord C2 exon
chr11:97676139-97676205
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGATCCTCCCAACAGGTG
3' ss Score
12.23
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCATCTATACCAGTAATAAGGATCCCATCTCTCATGGTGGAGGGATGCTGCGGGCTGTCTGCAGCACCCCACTCTCTTCCAGCCTGCTGGGGCCCACAGGAACCTCAGCCTTGCCGCGCCTCAGCCGGTCCCCCTTCACCAGCACCCTTGCATCCTCTTCTGCTTCCATCTCCACCACTCAG
Seq A exon
GTGTTTTCTCTGGCTGGCTCAACCTTCAGCCTCCCTTCATCCCACATCTTTGGAACCCCCATGGGCACTGTTAACCCCCTCCTCACCCAAGCGGAGAGCAGCCACACAG
Seq C2 exon
AGCCAGACCTAGAAGACTGCAGCTTCCGGTGTCACGGGACCTCCCCCCAGGAGAGTCTCTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437-'25-35,'25-30,26-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.378 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTATACCAGTAATAAGGATCCC
R:
GAAGAGAGACTCTCCTGGGGG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types