HsaEX6022277 @ hg19
Exon Skipping
Gene
ENSG00000108292 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:7138]
Coordinates
chr17:36873685-36875836:+
Coord C1 exon
chr17:36873685-36873866
Coord A exon
chr17:36874098-36874206
Coord C2 exon
chr17:36875770-36875836
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTCTACCTCCCTCCCTTAGGTG
3' ss Score
10.87
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCATCTACACCAGTAATAAGGACCCCATCTCCCACAGTGGCGGGATGCTGCGGGCTGTCTGCAGCACCCCTCTCTCCTCCAGCCTCCTGGGGCCCCCAGGGACCTCGGCCCTGCCCCGCCTCAGCCGCTCCCCGTTCACCAGCACCCTCCCCTCCTCTTCTGCTTCTATCTCCACCACTCAG
Seq A exon
GTGTTTTCTCTGGCTGGCTCTACCTTTAGCCTCCCTTCTACCCACATCTTTGGAACCCCCATGGGTGCCGTTAATCCCCTCCTCTCCCAAGCTGAGAGCAGCCACACAG
Seq C2 exon
AGCCAGACCTGGAGGACTGCAGCTTCCGGTGTCGGGGGACCTCCCCTCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108292-'17-22,'17-19,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=0.284 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGTAATAAGGACCCCA
R:
TGGAAGACAGACTCTCCTGAGG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)