RnoEX6049424 @ rn6
Exon Skipping
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85617226-85618712:+
Coord C1 exon
chr10:85617226-85617407
Coord A exon
chr10:85617564-85617672
Coord C2 exon
chr10:85618646-85618712
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTCCTCCCAACAGGTG
3' ss Score
13.84
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCATCTATACCAGTAATAAGGACCCCATCTCTCATGGTGGAGGGATGCTGCGGGCTGTGTGCAGCACCCCACTCTCTTCCAGCCTGTTGGGGCCCACAGGGACCTCAGCCTTGCCCCGCCTCAGCCGGTCCCCGTTCACCAGCACCCTCCCATCCTCCTCTGCTTCCATCTCCACCACTCAG
Seq A exon
GTGTTTTCTCTGGCTGGCTCAACCTTCAGCCTCCCTGCATCCCACATCTTTGGAACCCCTATGGGCACTGTTAACCCCCTCCTCACCCAAGCGGAGAGCAGCCACACAG
Seq C2 exon
AGCCAGACCTAGAAGACTGCAGCTTCCGGTGTCATGGGACCTCCCCCCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.378 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTATACCAGTAATAAGGACCCC
R:
GAAGACAGACTCTCCTGGGGG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]