GgaEX1036517 @ galGal4
Exon Skipping
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3994118-3998743:+
Coord C1 exon
chr27:3994118-3994302
Coord A exon
chr27:3995198-3995315
Coord C2 exon
chr27:3998677-3998743
Length
118 bp
Sequences
Splice sites
3' ss Seq
CACCTCCCATTGCCACGCAGGTG
3' ss Score
7.89
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGATCTACACCAGTAACAAGGACCCTATTTCCCACGGGGGCGGAGTGCTCCGGGCTGTGTGCAGCACACCCCTCTCCTCCAGCCTGCTGGCACACCAGGGCACAGCGTCCATCCCACCGCTCAACCGCTCTCCTTTTGCAAGCACCATCCCCACCTCCTCCTCCTCCTCCGTCTCCACCACGCAG
Seq A exon
GTGTTCTCGCTGGCAGGTTCCACCTTCAGCCTCCCCTCCTCCCACATCTTTGGAAGCCCCCTCACATCTGGGCTGTCCATCAACCCGCTCTTAAATCAGTCGGAAAGCAGCCGGGCAG
Seq C2 exon
AGCCCGACCTGGAGGACTGCAGTTTCGGCTGCCGAGGGACTTCGCCCCAGGAGAGTCTCTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=0.300 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACACCAGTAACAAGGACCCT
R:
GAAGAGAGACTCTCCTGGGGC
Band lengths:
246-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]