BtaEX0022545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39948893-39951733:+
Coord C1 exon
chr19:39948893-39949507
Coord A exon
chr19:39950378-39950486
Coord C2 exon
chr19:39951667-39951733
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTCTACCTCCTTTCCCTCAGGTG
3' ss Score
10.57
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGCCCCGGAGCCCCCCAAGGCTGACCTCTTTGAACAGAAGGTGGTCTTCTCTGGCTTCGGGCCCATCATGCGCTTCTCCACCACCACTTCCAGCTCAGGCCGGGCCCGGGCCCCATCCCCTGGGGACTATAAGTCTCCCCATGTCTCGGGGTCCGGGGCCTCTGGAGGCACCCACAAGCGGATGCCCACACTGAGTGCCACCCCTGTGCCCGCTGAGGAGACCCCTGAGACAGGCCTGAAGGAGAAGAAGCACAAAGCCAGCAAGAAGAGCCGACACGGGCCAGGCCGTCCCAAGGGCAGCCGCAACAAGGAGGGCCCTGGGGGCCCAGCCCTTCCCTCCCTGCCCGGTGCCCAGCTGGCTGGCTTCACCGCCACTGCTGCCTCACCCTTCTCTGGAGGTTCCCTCGTCAGCTCTGGTCTGGGTGGTCTGGCTTCCCGTACCTTTGGGCCTTCTGGGAGCCTGCCCAGCCTGAGCCTGGAGTCTCCCCTGCTGGGGGCAG
Seq A exon
GTGTTTTCTCTGGCTGGCTCTACCTTTAGCCTCCCTTCTACCCACATCTTTGGAACCCCCATGGGTGCCGTTAACCCCCTCCTCACCCAAGCCGAGAGCAGCCACACAG
Seq C2 exon
AGCCAGACCTGGAGGACTGCAGCTTCCGATGTCGGGGGACCTCACCCCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=0.176 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCTTCCCTCCCTG
R:
ATGGAAGACAGACTCTCCTGGG
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development