HsaINT1010361 @ hg38
Intron Retention
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr6:33416920-33417142:-
Coord C1 exon
chr6:33417097-33417142
Coord A exon
chr6:33416970-33417096
Coord C2 exon
chr6:33416920-33416969
Length
127 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGTTTATCTTTGTCCCTTAGATG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CTATGAGTGGAAAGGGAAGATCGAGGAAGACAGTGAGGTGCTGATG
Seq A exon
GTGAGAAACATTTCCCCCACCCAACAAAATATCCCCAATCCCTGACCCCTTTAGCCCTTACCCCTCTTCTGAGAAACTGAACTCAATCCCACTCCTTGATTCAACCATGTTTATCTTTGTCCCTTAG
Seq C2 exon
ATGATTAAAACCCAAAGTTCCTTGGTCCCAGCTTTGACAGATTTTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514:ENST00000374500:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
NA
C2:
PF0309110=CutA1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAAGGGAAGATCGAGGA
R:
CGAACAAAATCTGTCAAAGCTGGG
Band lengths:
91-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains