MmuINT0044188 @ mm10
Intron Retention
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:26938418-26938617:-
Coord C1 exon
chr17:26938572-26938617
Coord A exon
chr17:26938468-26938571
Coord C2 exon
chr17:26938418-26938467
Length
104 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGTCTGTCTTTGCCCTTTAGATG
3' ss Score
10.52
Exon sequences
Seq C1 exon
CTATGAATGGAAAGGAAAGATCGAGGAAGATAGTGAGGTGCTGATG
Seq A exon
GTGAGAAAATTCCCCCCCTGCCTGGCTCCTTTGACAACTCTGGCCCTCTCCTGACACCAGTTCTCTACCCCGTTGGTTGAACTATGTCTGTCTTTGCCCTTTAG
Seq C2 exon
ATGATTAAAACCCAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194:ENSMUST00000025027:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
NA
C2:
PF0309110=CutA1=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGAAAGGAAAGATCGAGGA
R:
CTCTGTCAGAGCAGGGACCAG
Band lengths:
85-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types