HsaINT1010454 @ hg38
Intron Retention
Gene
ENSG00000203886 | CYP17A1-AS1
Description
CYP17A1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:31671]
Coordinates
chr10:102832721-102834516:+
Coord C1 exon
chr10:102832721-102832871
Coord A exon
chr10:102832872-102834176
Coord C2 exon
chr10:102834177-102834516
Length
1305 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTCCATTTTGCTTCTCCAGCTG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GCCCAGGAGAAGCAAGGGCTTAGAGAAGAATCCAACTGTGACATCGAGAAGAGCCTGTCCAGTCCCTTCCCAGTAGTGGCTCTGGGGCCCAGGCCCGGCTTCCAGAAGATGGGGCAGCTCTACTCTGGGGTCAAAGCCAACTACTGCTTGG
Seq A exon
GTAAGGAGCAGGGCAGGCCTAGTCTTCCTGCACAGAAAGCCTGAGAGAATTGGCTCTCCCTTTCTCTGGAGCCCAGAGATTGGGCTGGCTGGGGTCTAGGATCAATGAGGGGGAAGCACACCTGAGGATTGTGCAGCAGGAAGGCCAGGGTCCATTTAACCACAGAGGTGGTGGTCTCCACGCCAGCCCCAAAGATGTCCCCTATGGTGGTGAGAATGTGGTTATCTGAAAGCAGCTCTGAGTCTTGATCTGGGCCAGCATTGCCATTATCTGAGTTCATCTTGGCTTGCATCAGTGTGTCCAGCATGTTGGTGATAGAGTCACTCCGGAATTTCTCCTGGGTTGGGTGAGGTTGGGAGACATTAATAAGGAAGGAGCCCCATCTGTGACACTCCTGCCATACTTCTGTCCCTGACTAGAGATAACAAGGCTCCTTCCACTTGGAAGTAGAGCAAGTCTGGGCAGGACCTACGAACTTGTGGAGGTAGGAGGCAGCCCCGGGCCCTCTTTAAATTTGGTGGAGAGGTTAGGTCTCTTCTAGGATCCTCTTCAGTTCCTCACTTTTCGATCCCAACTCCTTGAGTCAGTTTTTTTTTTTTTTTTGAGACAGAATCTTGGTGCAATGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCTGCTTCTCGGGTTCAAGTGAGTCTCCTGCCTCAGCCTCCCAAATAGCTGGGATTATAGGCATGCGCCACCGTGCCCGGCTAATTTTGTATTTTTAGTAGAGACAGAGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCTGCCCACCTTGGCCTCCCAAAATGTTGGGATTACAGGTGTGAGCCATCTTGCCTGGCCTAGTTTTTGTATTTTTAGTACAGACGGGGTTTCACCATATTGGCCAGGCTCATCTCGAACTCCTGACCTCAATTGATCTGCCCACCTCGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCAGCCCTTAAGTCAGTTTTTATTGTACACCTACTATGTGCCAGGTTCTCTGCTTGGTTTTGAAGCTTCTACAGTGTGTAGAATGGACTCCACCCTGCTCTTGTGATTACTTTTAGCCTAACTCATATTCTCTTCTGCTCTATCACCTACCTTGTAATTTTCAAGTATTTTATTCAGCAGATCATTTCGTATTTTAACATGGCTCTTTAATTTTTCCAGGGTTTTGTTGGGGAAAATCTGGGAAATAAAAAGAAATGTTAAATCCACCCTTCTTCCATTTTGCTTCTCCAG
Seq C2 exon
CTGCCAGAGTCTCTCCTGGAGGCGGATCTTAGCTTTCTGTCTCTGGAAGTTCCTACTCCACCCCTGACCTTCAGCCAGAATGGAAGGCAAGATGGGGACACAGAACGGGTTTATCATGACGACGAAGACAATTCTAAACAAGGGAGGAGGGCGTGGTCTCCACCTCTCCTTCCCCATTCAATCAAACATCAAGCGCTGACTCTGCTATGTGTCCAGCCCTTAGGAGTGAGAGAGACATGAGCCTGAAGGCTCAGACAAGCTCCTTAACCCCGCTAAGCCTGCTTCTCACCTGCACAATGGGGATAATAAAACCTACTTCCAAGGGGAATTCAGCGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203886:ENST00000369884:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGGGCAGCTCTACTCTG
R:
ATTGTGCAGGTGAGAAGCAGG
Band lengths:
343-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains