HsaINT1010970 @ hg38
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr11:46374766-46375045:+
Coord C1 exon
chr11:46374766-46374839
Coord A exon
chr11:46374840-46374933
Coord C2 exon
chr11:46374934-46375045
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTCATCGCCCGCCTTTGCAGGTA
3' ss Score
9.69
Exon sequences
Seq C1 exon
TGTGATGGAATGGACTTGACTCCCAAGATCCAGGACCTGAAACCCCAGTGTGTTGTTTTCCTGAACATCCCCAG
Seq A exon
GTGAGGAGGGGGCTACCGGAGCTGGGGGGAGCCCTGCTGTCCTTGTCCTGCAGAGACTGTGTTTTGAGGCCCATGTCATCGCCCGCCTTTGCAG
Seq C2 exon
GTACTGTGCGGGCACCATGCCCTGGGGCCACCCTGGGGAGCACCACGACTTTGAGCCCCAGCGGCATGACGACGGCTACCTCGAGGTCATTGGCTTCACCATGACGTCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091:ENST00000343674:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.266
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCAAGATCCAGGACCTG
R:
AACGACGTCATGGTGAAGCC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains