RnoINT0047100 @ rn6
Intron Retention
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80849144-80849407:-
Coord C1 exon
chr3:80849334-80849407
Coord A exon
chr3:80849256-80849333
Coord C2 exon
chr3:80849144-80849255
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTCTGTTGCCCTCCTTAGGTA
3' ss Score
11.34
Exon sequences
Seq C1 exon
TGTGACGGAATGGACCTAACCCCCAAGATTCAGGACCTGAAACCGCAGTGCATAGTCTTTCTGAATATCCCCAG
Seq A exon
GTGAGGACGGCGGCTCCCGTGGTCTCTGTGTCCCACCCGGCTGAATCCATGCCACAGCCCTTCTGTTGCCCTCCTTAG
Seq C2 exon
GTACTGTGCAGGCACCATGCCCTGGGGCCACCCTGGGGAGCACCATGACTTCGAGCCCCAGAGGCACGATGATGGCTACCTCGAGGTCATCGGCTTCACCATGACATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737:ENSRNOT00000024280:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0060914=DAGK_acc=FE(15.2=100)
A:
NA
C2:
PF0060914=DAGK_acc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCCAAGATTCAGGACCT
R:
AAGGATGTCATGGTGAAGCCG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]