HsaINT1011383 @ hg38
Intron Retention
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225374688-225377436:+
Coord C1 exon
chr1:225374688-225374885
Coord A exon
chr1:225374886-225377236
Coord C2 exon
chr1:225377237-225377436
Length
2351 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGA
5' ss Score
4.36
3' ss Seq
ACAAAATGTTAAATTTTCAGATA
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTTGCCATTAAGGTGTTGGAAAATTCCCTGAGAGGACAGCCCAGCATTTCGTGGCAAGCACTGCGCTACCTGATTGGAGAAGTGATTTACGGTGGCCGGGTGATTGATAATTGGGACAAGCGATGCTTGAAGACCCTACTCTACAAATTTTGTAATCCTGAAGTGCTGAAAGATGACTTCAGTTTCTCCAGTGATGGG
Seq A exon
GTAGGAAAAGAATCAATCTTCTTGCATTTCTCGATAATTTTAAAGTAAACATTGTTGCTTTATTTAAAATACATATTTAAATAAATTTTGATGTTCATTTTTAAAGGCTTTTAGTAGCTTTCAGTAGTATGGAAGTAATTTACCCATGACTCTATTAAACACAACATTATGCAGGGCAGTAAACAAAAAGAATGATTTAAAAATCGTTCATGTCCTCCGAGAACGTAGAGTGTAAGATGCAAAGCACAAGGAAGCTAACATTTATAAATCAACGATTCCATGCCAGTCACTTGATATATGTTTCTCATTTAATGCTCAAAATAACCATGGGGAATAGATGCTGTTATGTTTCCAGAAATCCCACATCTCTTGTTTATCCCCTCTTCTCCCCCTCAGTTTCTATCCTCTATCCAAGCCTTCACATTTGTGGAGCAGAAAACTCCATATTAGACACCAGCAGCTGTGTGTGCCTGTTGAGTGGCTGCTAGCAGAGGAAAGAATCCTACAGACCTCTGACCTTAGACTGTAGAGGGTTGGACTTGACATAAACTTTGATGGGTGGGAATTTGGATAAGAGAGGTGAATGGAAGATGAAAAGGAAGACGACAGCTGTGGGTGATCATTGTGAGCTGGGAGTGGGCCTGGTATCATCAAGAGAAAGAGAGGTCATATCCAGGTTGTCTGTCTGAGGTCTTGAGGATATGGATAGATAAACAAAATAGTAAAAATATTTTAGGGAGATTCATTTGTAAGGCATCTATAGAATGGATAGCAATGGTCTATGTTGATGACCCTGAGTCAATAAGAAGGCATTAAATTATATCCTTTATGCACTATTTGCTAAGGCAGAAAAAGCTATGAGGGCTTTTTTTTTTTTAAGATTTCCATCAAAAAACAACAACAACAACAAGTGTCTTAAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAACCGAGGCAGGTGGACCACTTGAAGCCAAGAGTTGGAGAGCAGCCTGGCCAACATGATGAAACCCTCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGATGGTGTGCACTTGTAGTCCCAGCTACTCAAGAGGCTGAGGCCCGAGAATCACCCGAACCCAGGAGGTGGAGATTTCAGTGAGCCGAGATCACACCACTGCATTCCATCCTGGGCATCAGAGCAAGATCCTATCTGAAAAAGAAGGAAAAAAAACTGTTTAAAATAACATTTTAGTTAAATTTAGGATTCTTTGGCCAAATGTGGTGGCTCATGCCTATAATCCTAGCACTTTGGGAGGCCGAGGAGAGTAGATCACTTGAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATGATGAGACCTTATCTGTACTAAGAATACAAAAATTAGCCAGCCATGGTGGATCATGCCTGTAGTCCTAGCTACATGGGAGGCTGAGGCATGAGAATCACTTGAACCCGGGAAGCAGAGGTTGAAGTGAACCGAGATCATGCCAGTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAGAAAAAAAAGTTTAGGGTATTTTAAATTGCCCAAAGAATACAATGTGCATGGTTTTGTACAGAGTATTACATTAAGTATGCACTAAGAGAATAAGGTATACTGTAACATACAGCATACAATTGCATTGGCAGAATTATATCAGATGACAGAAGGGTATTCTGAAATTTGTATTTCAATTGTTCAGTTGCTTTAAAACACTAGGAATTTTATGACAGTTCCAGCTTGCCAGCTCTTCCTGTTTTTTGTTATAATCTTGCTTCTTCTGCAGGTAATTTTTTTAATCAGTGACTGTTATTTGATTTTTCCCTCTGACCTTCATTAATTCTTCAACATTTTCCTTAATGATATCAAGAAAGCCACCATCACCCACTTTCCTGACCATATGAACAATGCATTTCTCTTCTTGGTCAGTGGTCAATTATTCTTAAGATCATTCTCACATTCCTTCTATAGGTTTCACTAAAGTAAAATGATTTGTTCAAGCCTTATTGCATTCATTATCTATGGGTGGTCAGAATCACCCTCACCTTTAAAGCGTTTTTTTTTTCTTTCTCTCTTTTCCCAAAAAGAAAGTTATACATGCATATCATATGCACATTACAATACAGTAGTCCCAAATGTTGCTTTTGACAGTGTCTATAATATACCACATGCAAATAAGAAAGCCTTCGGTATAAAATTTCATGGGAAAATATTGTCTTCAAGCATTACTGAAAGTAGGTATCTTACTCTGGCAAAAACCAACAAAGTGTTCAGAAGTAGCAGGATTGAAGAAAAAAGCTAACAAAATGTTAAATTTTCAG
Seq C2 exon
ATATGTCTGCCAGTTCCAGGATCTGCAAGCATAAAGGACTACATACACATTATCCAGTCCTTACCTGATGATGACCTTCCCGAGGTCTTAGGAATACACCCAGAGGCCATCAGGAGCTGCTGGGAGACCCAGGGCGAAAAGTTTATTGAAAATCTGATTGCCATGCAACCAAAAACTACCACTGCCAACCTCATGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842:ENST00000327794:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.1=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(9.4=9.8),PF0302810=Dynein_heavy=PU(26.8=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains