RnoINT0002322 @ rn6
Intron Retention
Gene
ENSRNOG00000051880 | AABR07021996.1
Description
NA
Coordinates
chr13:101956738-101958566:+
Coord C1 exon
chr13:101956738-101956935
Coord A exon
chr13:101956936-101958366
Coord C2 exon
chr13:101958367-101958566
Length
1431 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CAGAGCAATTAAACTTTCAGATG
3' ss Score
3.14
Exon sequences
Seq C1 exon
GTGTCCATAAAGGTGCTCGCAAATGTCCTCTCCGGTCAGTCAGAAGTCCCATGGAAGGAAGTGAACTACCTGATCTCGGAAGTGACCTACGGTGGCCGGGTGACTGATGAATGGGACAAGCGATGCCTGAAGGCTCTTTTCTACAAATTCTGCAATCCTGAAATACTAAAGGATAACTTCAGTTTCTCTAGCAATGTG
Seq A exon
GTAAGAAGTGAGCTATCTCTTCCTAATTATTTCTAACCGGGTTTTGTTGCATTCTCTATGTCTCCAAGCAAATTTCAGTGATTAGTGGTTTTCATCAACTTTCAGAACGGTATTACAAAACCAACTTCCCACTATTTTTTTTTAAATATTATTTATCTAGTGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGCCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGCACACTTCTTAGGCACTCAGAGCTTCTGTTCGCTTTTAAATGTTTAAAGGAACGTTTAAGTCTAGGTTCTCACGTCGGTCCCTAAGCTAACGTTAGCCTTGAACATGCTTTTAAGTTGCTCAGTAAACGTAGTGTGTCCATGTTCTGTATGTAGACTGTCGCACTGAATGTCTGCAGATGGGCAGGAGATGCAGTGACACAGATGTAGCTTGTACTTTACTGCAACATACCACTTTAACAAAAAGTATATTCTGAAATCTATCATTTCAATTAATTACTTTAAAACTCTGAAATTTTTATGACCATTGCAGCTCACTAGTCGATCCTTCTTGCTGTACTAATCTTAGTCTATTTCCCTGATAACGCCTTCATCAGTGACTTTGTTCTAGGTCATCAGTGAAAGCCACCAGCAGCAGCCTCATGTGCACATAAACAGTGCATTTCTCTTCCTGGTCACCGCTCATTCGTCATTAATATTTGTACTAGGCAGATGTCCAGCATTTTTTGACAGACGCTTAAAACACACAATCCTGGGGAGGAAAGATGTGTTTTTAGCTTATATTTCCAGATGTTTCAGTCTATAGTAAACCATGCTGCTCTGAGGCCTGTTTCAGCACAGGACCTCACAGGGGGACTGTGTGACAAGGAGGTTGCTCACTAATGGCCGCAATAAACAAAGTTGGACACGGTCAGCGTCTAAACATCTCGTGACACACCTCGATCCTCTAACGTCCTCTCTACTTAATAGTCTCGTCTCCTCCCAGTGACACGAGACTAGTCACCACACTTCTAACACATGAGGCCTTGGCCTCCCTCACATGGCTTCTACAGGTTGTACTAAAGGCCTCTTACTTCCATTACCAAGGTGTATATTTCATCAAGGTAAGGTCAGAGTCCCCTAGCCTTTAAATGTCCCCCCCTCCCAGCCAGAAAGTTACATGTGTGTGTCATACAGTTTGCAATAGAGTGGTCCCAAGTGTGGAGTGTCTGTATCATATCAAACTAAGAAGAGTCTCTTGCGTAAATGGTCATGGGGAGTTGCTAGCTCTATGTGTTACCAAGAGTAGATGTCTTACTCATGCAAAGCTAACAGAGCAATTAAACTTTCAG
Seq C2 exon
ATGTACCAAGCAGTGCCCAGCTCCGCAAGCTTAAAGGACTGCATCAGCATTATCCAGTCCTTTCCAGATGATGACTCTCCCGAAATATTAGGAATCCATCCCGAAGCCACATACACCTGCAATGAGATCAAGGCCCAGAAATACATTGAAAATCTCATCTGTATGCAACCAAAAGATGCCCCAGGCACCCCCATGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051880:ENSRNOT00000082633:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCGGTCAGTCAGAAGT
R:
TGGGGCATCTTTTGGTTGCAT
Band lengths:
355-1786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]