HsaINT1011449 @ hg38
Intron Retention
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7734470-7737258:+
Coord C1 exon
chr17:7734470-7734708
Coord A exon
chr17:7734709-7737066
Coord C2 exon
chr17:7737067-7737258
Length
2358 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TCATCTCTCTTTACTGCCAGGAT
3' ss Score
8.33
Exon sequences
Seq C1 exon
CCTCCATGATCCACTGGACCCGGCAGATAAAGGAGATGCTCAGTGCCCAGGAGACTGTGGAGACAGGAGAAAATTTAGGTCCTCTGGAGGAGATTGAGTTCTGGCGCAACCGATGCATGGACCTGTCTGGCATCAGTAAGCAGCTGGTGAAGAAGGGAGTGAAGCACGTTGAATCCATCCTGCACCTTGCCAAGTCGTCCTACTTGGCGCCCTTTATGAAACTGGCACAGCAGATCCAG
Seq A exon
GTTTGTGAGCGAATCAAAGGATTCAGGCTCAGCAAGAAGTGGGCAATGGTTGGGATGATACAGGGAGCTAAGTAAGGAGAGGGAGCCAAGGCAATCTTCGATAGCACAGACTGACCCACCCAGGGTTCGGCCTTGTACTTGCAGGAGAGTATAAAATAGTAGAATAGAGGGTCCCTAAGGAGAGAGACATCAAGTTAACCAATAAATATACATCAAGTACCTTCTGTGAGCACAACCCCTGCCACCCAGCTGGGAAAATAAGATTACCCAAAACAGGATTACTAGACAGCGTGGGAGCCAAAGATGAGCTCATGTGGTTCAGTCCAGGAATTACAAGATAAATACCTTTTTTCTTTGTTTGAATCTGCCTTCCAAGGAAAATCCAAGGAAAAGGGATAAATACTTTTTTTCTTTTTCTTTTCTTTTTTATTATTATTTTTGAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGTGCCCGCCACCAAGCCTGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGTCAGGCTGGTCTCAAATGCCTGACCTCGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCACCTGGCTCTTTTTCTTTTCTTTTCATTTCTTTTTTTTTCCTTTTGAGACAGGGTGCTGGAGGCTGAAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCTACCTCCTGGGCTCAAGGGATCCTCCCACATCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCAGCATGCCCGGCTAACTGTTGTATTTTTTGTAGAGACAGGATTTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCACCCACTTCAGCCTCCTAAAGTGTTGGGATTACAGGCGTGAGCTACCTCACCCAGCTCAATTGTTAATTTTTTTTATTATTATAATTTTGAGACAGAGTCTTGCTCTGTCGACCAGGCTGGAGTGCAGTAGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGTGCCCACCACCATGCCTGGCTAGTTTTTGTATTTTTAGTAAAGACGGAGTTTCATCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCACAAAGTGCTGGGATTACAGGTGTCAGCCACCTCGCCCGGCCTAATTTTTAAATTTTTTGTAGAGACAGGATCTCACTATGTTGTCCAGGCTGGTCTCAAACTCCTGGTGATCCTCGGCCTCCCAAAGTGTTGAGATTATAGGTGTGAGCCACCACACCTGGGCAATAAACATTAAAAAAAAATTTGATATGATGTGACAGGCTGATTATGTTAGTGCTAGGTCACACAGGAGGTAAGAGTGGCCTGTAGAATACAGATAGAAGACCTGTCTTCCTAGGTGAAAATTTCAGCTGGGCATTAAGGGAATTGAGCCAGAACTAACTGGAGGAGCCTAAAGCCCTGGCTGAGAACAGGGCAGTGAAAGGGAACTGGGTGACAACTATGGGGACGAATGAGAGTGATATGCGGCCAGTTGATCCGACAGCAACAGAGTATCCACTTAGTGCGGAGTCCTGAATTCAACTGGAGAAAACAGACACAAAATCTAGAAAAATCTAGACTCGAGGGAATTCTTAGTCTGGTAGGGGAGCTAGGGCACACACATGAGAAAAGAAAAGTTGACATGTGCTAACTCTGGTCCGAAGGCTCACAGAGACCTGAAATGATCGCTACTGTGTAGGGCTGATGGGAGGGATTCCTCTTAGAGGCAAGTCAGAATGGGGTTGAAGATGGTTAAAAAGCACTTGTGGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATTACTCAAAGTCAGGAGTTCGAGACCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTTGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGCAGGCGGAGGTTGCAGTGAGCTGAGATCGCGCCATTGCACTCCAGCCCGGGTGACAAGAGTAAAACTCCATCTAAAATAAATAAATAAATAAAAGCACTTGTGTTGAATCAGTGCTTTCTAGTGCATAAATCTATTTCTCATCTCTCTTTACTGCCAG
Seq C2 exon
GATGGCTCTCGTCAAGCACAGTCAAACCTGACCTTTTTGTCAATCCTGAAGGAACCTTACCAGGAGTTGGCTTTCATGAAGCCCAAGGACATCTCTAGCAAGCTCCCTAAGCTGATCAGTCTCATCCGCATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAGAGACTGACCTCGCTCTTCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914:ENST00000572933:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(50.3=100)
A:
NA
C2:
PF083857=DHC_N1=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains