MmuINT0050872 @ mm10
Intron Retention
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69518276-69520950:-
Coord C1 exon
chr11:69520712-69520950
Coord A exon
chr11:69518468-69520711
Coord C2 exon
chr11:69518276-69518467
Length
2244 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
3' ss Seq
TGGTTTCTCTTTATGGATAGGAT
3' ss Score
6.84
Exon sequences
Seq C1 exon
CCTCCATGATCCACTGGACGAGGCAGATCAAGGAAGTGCTGAGTGCCCAGGAGTCTGTGGAGACCGGAGAGAACTTAGGCCCTTTGGAGGAGATCGAGTTCTGGCACAATCGCTGCATGGACCTGTCCAGCATCAGCAAGCAGCTGGTGAAGAAGGGTGTGAAACACATCGAGTCCATCCTGTTTCTGGCCAAGTCATCCTACTTGACGCCCTTCAGGAAGCTGGCCCAGCAGATCCAG
Seq A exon
GTTGAGTGGATCCGGGGCCCTGGGGCTTATCAAAACATGGGTAGTGGCTGGGGTGGGGGCAAGAGGAGGAAGCCAGGCAACTAATCACAGTGCACAGACTGGCCGGGCACTGTGGGCTTAGAGAGGACACGAGTCGTGCTTGAAGGTCTCCAAGGAGCTTGACGTTTAGGTAGGAAGATATCCAATTAGTCCCCGAGGAGATGGTGGTCCCTTCAGTGAGCTCGGCACTCCAGCGCAGCTGAGAAAATAGAGTTTAGGTAAAAGAGGGCTTAAAGATTGCACGGAGCTGAGGATAAGCTTGTGTAATTCAGTCAGGAGAGTTTCAAAACAAACCTGTAAAAAGTGCATTTCCTGTGACTGGCTGACTATGCTGGTGCTGGGTCCCCCAGGAGGTGCCTGCTCTTCCTTCCCCAGGGGATGGGTGGAGGGGTGGGATTTCAACCAGACATTGAGGGAATTGAGCTGTAATGAGCCGGGCAAGCCTAAAACCCTCATTGAGACAGCAAGGGGACCGGGTGACCTTAGTGGATGTGGGAGGGGAGTGACACCCAGGCAGTTAGCCAACAACTCTGAATATCCACTTTGTACAGAGTTCTTCATTTCATTGGAACAGGCACCAGCCCTGGGTTTAGGGAATTCCCAGCCTGAAGCCTTCATAGGAAGCAGCACAGAAGAGCTGGGGACAGTGGCAAAGTGCTTGCCCTGCATGCACGAGACCCCGGGGTCAATTTCCACATGGAATAAACTGTAGCATGCACTGGTGGAGGCTCAGAAATTCAAGGTCATCCTCAGCTACATAGTTAATTTGATACTAGCCTAGACTATGTGAGACCCCATCTCAAAAAAAAAAAAACCCAAAACAAAAAACCAAAACACAAGTGGAGGGCTTGAGAGATGGCTGAGAGGTCAAGAGTATTAGATCCTCTTGCACGGGACCCGGGTTCAGTTCCCAGCACTCACATGGCCGCTCAGAACCATCTATAACTACAGTTCCAGAAGATCCAACGCTCTCTTCTAGCCTCCTAAGGCATGTCATATCAAATATAGGCAAACATGCAGGCAAAACACCCACACACATAAAAATAACTATTTTTTAAAAGCAAGTGAATATGCAAACACTGGTCCTGAAATGATAATTAATGGAGAGGAGTTATTGGGGGAGGTTGCCCGGAAGATGAAGACAGATGGAAAGCTGAACCTGTTTTTGTTTGTTTGTTTGTTTGTTTTTTGGGGTGTGTGTATGTGTGGTATACACATGTTCATGTGGGTGTGTATACATGTGTATGTGTGGTTTATACACATGTTCATGTGGGGGTGTGCACATGTATGTGTGGTCTATGCACATGTTCATGTTGGCGTATGCACATGTGTGTGTGTGTGGTCTATACACATGTTCATGTGGGGGTGTGCACATTGTGTGTGTGTGTGTGGTCTATATACATGTTCATGTGGGGGTGTGCACATGTGTGTGGTCTATGCACATGTTCATGTGGGGGTGTGCACATGTGTGTGTGGGCTATGCACATGTTCATGAGCGGGCGTGCACATGTGCAGACCAGAGGAGATCACTGGCTATCATCCTCAATCGTTCTTCACTCTGTTTTATTTTTTATTTTTGTTTTTTAGAGACAAAGGTTTCTCTGTGTAGCTCTGGATGTCCTGGAACTCTCTCTGTAGATGCAGTCTGTCCTCAAACTCAGAGATCCCCCTGCCTCTGGCTCCTGAGTGCTGGGAACTTAATTTAAAAAAAAAAATCGTTTATTTTATGTGCATGGGTGTTTTGCCTGAATGTCTGTCTACCACATGCATGCAGTGCTCAAGGAAGCCAGAAGAAGGCATGGGGTCCCACAGAACTGGAGTTACGGATGGTTGTGAGCTGTCATGTGGCCGTGGGAACAGAACCTATAGGTCCTCTACAAGAGTAGCCAGTGCTTCTAACTGCTGAGCAGTCTCTCCAACTCCATGTTATATGTTAGTCAGGTCTCTCGCTGATCCACACCTATTGACCTAGTGTCACTGGTCAGCCAGCACCAGGGACCTGCCTTGTCTTTTCCCACCAAGCCAGGGCTGGGATTAGGGACACAGGCCACTGTGCACAGCTTTTACATGGATGCTGGGAATCTGAATTCAGGTCCTCATGTTTGCACAACAGCAAGCCCTTTATCAACTGGGCCCTCTTTCCAGGCCCCTAAATCTGTTTCTCCCACATGGATAATAGTACTCCTGGTTTCTCTTTATGGATAG
Seq C2 exon
GATGGCTCTCGACAAGCTCAGTCCAACCTGACTTTCTTGTCCATCCTGAGGGAACCCTACCAGGAGTTGGCCTTCATGAAGCCTAAGGACATCTCTGAGAAGCTCCCGAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCCCCCCACTACAACACTCGGGAAAGGCTGACGGCGCTGTTCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237:ENSMUST00000035539:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(50.3=100)
A:
NA
C2:
PF083857=DHC_N1=PU(15.9=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types