RnoINT0048923 @ rn6
Intron Retention
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56122534-56124472:-
Coord C1 exon
chr10:56124234-56124472
Coord A exon
chr10:56122726-56124233
Coord C2 exon
chr10:56122534-56122725
Length
1508 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAG
5' ss Score
1.68
3' ss Seq
CTGTTTCTCTTCATGGCTAGGAT
3' ss Score
8.48
Exon sequences
Seq C1 exon
CCTCCATGATCCACTGGACGCGGCAGATCAAGGAAGTGCTGAGTGCTCAGGAGTCTGTGGATACAGGAGAAAACTTAGGTCCTTTGGAAGAGATCGAGTTCTGGAACAACCGCTGCATGGACCTGTCCGGCATCAGCAAGCAGCTGGTGAAGCAGGGCGTGAAACACATCGAGTCCATCCTGCTCCTTGCCAAGTCGTCCTACCTAGCGCCCTTCAGGAAACTGGCCCAGCAGATCCAG
Seq A exon
GTTGAGTGGTCCAGAGGCCAGACGCTTTATCAAAACGTGGGCGGTGGCTGGGGTGGGGCAAGAGGAGGAGGGAGGCAGGCAACTAATCATACACAGTGCACAGACTGACCGAGCGCTGTGCACTTGAAGAAGTCATAAATAGTGTGTAAAGGTCCCCGAGGAGCTTCATGGTTAGGTAGGAAGACATCCAATTAGTCAGGGAGGAGATGGTGGTCCCCTCAGTGAGCCTGGCGTTCCAGCGCAGATGAGAAAATAGACTCGCACAGAGATCGCAATGAGCCAAGGAAGAGCCTGTGTAGTTCACTCAGGGGAGTTTCAAAACAAACCTGTGAACACTACAGTTCCTGTGACAAGCTGATCGTGTGGTGCCGGGTCCCCCAGGAGGTGAGTGATCTTCATCAGGACCTTTCTCCCTGGGTGGAAATTCCAACCAGACATTGAGGGGATTGAGCTGTAATGAGCTGGAGAAGCTTCAAACCCTCACTGAGACAGTAAGGGGACTGGGTGACCTTAGTGGATGTGAAAGGGGAGGGACGCCCAGGCAGTTAGCCCACAGCTCTGAACATCCACTTTGTACAGAGTTCTTCATTTAATTGGAACAGGCACCAGACCTGGGTTTAGGGAATTCCCAGCCTGAAGCCTTCATAGGAAGTCGCACAGAAGGGCTGGGGCCATTGCTTATGTGGCAAAGTGCTTGTCTAGCATGCATGAGACCCTGGGGTCAGTTTCCAGCATGGAATAAACTGGGCACAATGGCCGTAACTGTAATCTCAGCATTCTCAGGGGGAGGCAGGAGGCTCAGGTCATCCAGCTACATAGTAAGCTTGATGCCAGCCTAGACTGTGTGAGACCCTGACTCACGCAAAGCAAGTTGAGATCAGGCTGGCCTCAAACTCAAAGATTTCCCTGCCTGTGCTGGGAACTTAACTTTTTTTTTTTTTTTTTTTGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAGAACTTAACTTTTTTAAAAAAGACTTATTCATTTATTTTATATGCATGGCTGTTTTGCCCGCGTTGTCTACCACATGCATACAGTGCCCAAGGAAGCCAGAAGAGGGCATCGGATCCCGTGGAACTGGAGTTACAAATGGTTGTGAGCTGCCCTGTGGGCACAGGAACAGACCCTGTGGGTCCTCTGCAGGAGCAGCCAATGCTCAGCAGTCTCTCCAGTTCCACATTACAATTTAGACAGGTCTCTCACTGACCCTGACCTATTGGCTAGTGTCACTGGTCAGCAAGCTCCAGGGACCTGCCTCGTCTTTTCCACCAAGCCAGTGCTGGGATTAGGGCCACGGGACACAGTGCTCAACTTTTAAACGGATGCTGGGAATCCGAATTCAGGTCCCCGTGTCTGCACAACAGCAAGCCCTTTATCGACTGAGCCGTCTGTTTTCCTCCCACATGAATCACAGTACTCCTGTTTCTCTTCATGGCTAG
Seq C2 exon
GATGGCTCTCGGCAAGCTCAGTCCAACCTGACTTTCTTGTCAATTCTGAGGGAACCCTACCAGGAGCTGGCCTTCATGAAACCTAAGGACATCTCCGACAAACTCCCTAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAAAGGTTGACTGGCCTGTTCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688:ENSRNOT00000090809:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.8=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCAGGAGTCTGTGGA
R:
TGTAGTGGGGAGAGTTGACCC
Band lengths:
356-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]