RnoALTD0009194-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56122534-56124472:-
Coord C1 exon
chr10:56124234-56124472
Coord A exon
chr10:56123850-56124233
Coord C2 exon
chr10:56122534-56122725
Length
384 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTGTTTCTCTTCATGGCTAGGAT
3' ss Score
8.48
Exon sequences
Seq C1 exon
CCTCCATGATCCACTGGACGCGGCAGATCAAGGAAGTGCTGAGTGCTCAGGAGTCTGTGGATACAGGAGAAAACTTAGGTCCTTTGGAAGAGATCGAGTTCTGGAACAACCGCTGCATGGACCTGTCCGGCATCAGCAAGCAGCTGGTGAAGCAGGGCGTGAAACACATCGAGTCCATCCTGCTCCTTGCCAAGTCGTCCTACCTAGCGCCCTTCAGGAAACTGGCCCAGCAGATCCAG
Seq A exon
GTTGAGTGGTCCAGAGGCCAGACGCTTTATCAAAACGTGGGCGGTGGCTGGGGTGGGGCAAGAGGAGGAGGGAGGCAGGCAACTAATCATACACAGTGCACAGACTGACCGAGCGCTGTGCACTTGAAGAAGTCATAAATAGTGTGTAAAGGTCCCCGAGGAGCTTCATGGTTAGGTAGGAAGACATCCAATTAGTCAGGGAGGAGATGGTGGTCCCCTCAGTGAGCCTGGCGTTCCAGCGCAGATGAGAAAATAGACTCGCACAGAGATCGCAATGAGCCAAGGAAGAGCCTGTGTAGTTCACTCAGGGGAGTTTCAAAACAAACCTGTGAACACTACAGTTCCTGTGACAAGCTGATCGTGTGGTGCCGGGTCCCCCAGGAG
Seq C2 exon
GATGGCTCTCGGCAAGCTCAGTCCAACCTGACTTTCTTGTCAATTCTGAGGGAACCCTACCAGGAGCTGGCCTTCATGAAACCTAAGGACATCTCCGACAAACTCCCTAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAAAGGTTGACTGGCCTGTTCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-10-9,11-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(13.8=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCAGGAGTCTGTGGA
R:
TGTAGTGGGGAGAGTTGACCC
Band lengths:
356-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]