HsaINT1011575 @ hg38
Intron Retention
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:196024429-196026940:-
Coord C1 exon
chr2:196026760-196026940
Coord A exon
chr2:196024505-196026759
Coord C2 exon
chr2:196024429-196024504
Length
2255 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
ATTTTAAAATTTTCTTTTAGTTG
3' ss Score
7.63
Exon sequences
Seq C1 exon
AGATATTACTATTATATTCACCATGGAATTGATACAGACCATGTAGCCCCAATGGAAGATTCTTGGCTAGAACACGTACTGGATTTAGTTCCACAACATCTGAAAGTCTTCACTGACAGCATAGTTACATTATCTGATGAAATGAGAGAGGATTATCTTCTTAGTGTAAGGAAATCCATAG
Seq A exon
GTAAATTGGTATTATGCTTTGATTTTTAATTCAAATATGTGTCTCATTAAAGATTATTTTTGTATTAATAATACCTATACTTGAAACTAGTCACAATATTATAATTATGCCATTTCTTACATTGCTGTTATATTACTTAAGATCTTAGGCAAATTCCATTAATGTAGTATTACAAAAAATAATTCTATTTCTATTTGTAGGGATATATCCCCACCACAAAGGATAGCACTGAAGAAAATTATAAAGCATTAATTTCAATCCCTCAAGATATTTATTGAGTGTCTAATTTATGCGAGGCATTAGGCATTTAGGAGATAGTCTCTCCCTTTAAGATGGTCTCTTCATTCCAGGATCTTTTGGTGTAGACATGAGACAAGACATACATATTTAAATAATTACCTAAAAGTGTAAGCATTAACAATGAACATTAGTATTACCGATGTCATAAATTAGAATGTGATTAATACAAAATTGTTGCAGTAGACCAAAGGTTGACAAACTATAGCTCACAGGCAAATCTGGCCACTGCCTGTTTTCATAAAGTTTTATTGGAACATAGCCACACTAATTCATTTGCATGTCATCTACAAATCTGGCTGCTTTTGAGCTACAAGAGCAAAACTGAGCAGTTGTGACAGAGTCCTTGTGGCCCACAAAGTCGAAAATAGTTACAGTCTAACCCTTTACATAAATAATTTGTTGACCCATGGTACAGACAAATAGATTCTAAGGCTGACTGATTACCAGAACCGTTTTAAAAATACTGACTTCTGGCCCCACCTGAATTAAAATCCCTGGAGTCAGGGCCTTGGAATCTGTACTTTAAAAAAAGCGTCTCCAGTTGGTTATGATAGTAAACCTAGTATGACGGATGCTGTGTTCAAAATTGGAGAAATAATAATGCTTTGGAGTAATGTGGGGACCCTTATTGGTGGAGGACATTCATTGTATTTATGACTTCTATGGAGTATCCTGGTGATATAAAAATAAAAAGCCTAATCCCTGCCCTCAGAGTTCATAGTGTAATGAGGGAGATAGACAATTAACTAAATATAAAGCAAAGTAATAAGTCCAAAGAGGAAAGAAACAGAAGATACACTGTAAGGGAGAAGAGGTCATCTCTAACTTGTTAGGAAGGACTCTGGAGGAGCCTAAACTAAGTCTTGAAGGATGAAAAACAGTCTAGTCGGGAACATGCTTGGCCTAGGAAATGGTGTGAATGATAGCAGACGCCCATGAGAGGCTCTTCTGGGCTTGTAAGCAGTTCTGAAGCCAAAGCATAGGGTGCATCTGGGGAAGGGGACAGAATCTGAAGGGCTTTATATGCCTTTTTAGAGCGCTTAAAGGTAAAGGAGAGTCTCTGAAAGATTGTAGGGAAGGGGGTAATACATATGATTTGCATATTAGAGCTTCTTGAAATATGGGCAGAAGAATTAGAATTAAATGTGAATTAAAGACCATAGAAGACAGAAGCGAGGTAGCTGACTTCTCTGATTTTATAACAAGACTGTTTTATGCTCTTATGCAACTTAAAAGAGAACAAGGCAATACTGTTGTTCCTTGGTATCCACAGGAGATTGGTTCCAGGACACTCCCCTCCCTGACAGATACCAAAATCTGCAGATGCTTAAGTCTCTGATATAAAATGGCATAGTATTTGCATATAACCTATGTACATCCTCCCGTATACTTTAAATCATCTCCAGATTTCTTATACTACCTCATACAATGTACATGCTATGTAAATCGTTGTTACACTGTATATTTTTATTTGTATCATTTTTATTGTTGTCTGTTATTTTTATTATTTTTTCTGAATATTTTTGATTCATCGTTGGTTGAATCCATGGATGCAGAACCTGCAGATACAGAGGGCCAAGTGTATGTACCTTTTCTCGGTGAAATAGAACTACTGCTATCCTGTATTGTTGACCTTCAATTCAACAAGAATATTTTTGATGGAATAGCTATAAAGGAAAATATAATATTAAGAGCAATTATTCCTTTCAAATGAAAGAGGAGGGACACATTGTGTTAAGAAAGGGAACATATATCCTCAAAGACACAGACATGATACATTTTCTTGTAAGGTTTTAAAAATTTTCTTCTCCTCATAAATGCACAAATTTCTCATTATTAAACAACTTTAATATAATTTAAACAGTTAATCTTAGTAGAACTAGCTTTGCAATTGCTTGGAAATGTACTACAGTTAATATAAGGTTATTTATCAGAATTTTAAAATTTTCTTTTAG
Seq C2 exon
TTGATTTTGTTTTAAAAGATCCTCGAGAGAAAGGAGATGATAAGAAGACAGATGAACTTCCAGCCCATCGTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997:ENST00000312428:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains