HsaINT1011687 @ hg38
Intron Retention
Gene
ENSG00000233540 | DNM3-IT1
Description
DNM3 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41494]
Coordinates
chr1:171864187-171864687:+
Coord C1 exon
chr1:171864187-171864293
Coord A exon
chr1:171864294-171864398
Coord C2 exon
chr1:171864399-171864687
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CCTGCATATTTTCCATTAAGGTC
3' ss Score
7.52
Exon sequences
Seq C1 exon
TGCAGGGATTGCAAGGACACCTGCTGTATTTAAAATGCTGCATTTTCTTGGCATACCATTTAAGACAAATTACAAAAACCTATAACTGAAGCCTGTTTTTCCAAAAG
Seq A exon
GTACGTTTCCTGGTTTGGACCTGTGGGTAGTGAGTGGAAGAACACATTTGGTGTAGAAGGAAAATATGTATATATTCTGATCTACCCTGCATATTTTCCATTAAG
Seq C2 exon
GTCTCCAGCTGCCTGAACATTAAGGAGCTGTGCCAGTAAGGAGGACAAGACCTGGTAACTGGTTAAAAGAAGCTAACAGAGCTCATGATAAGGCTTGCCAGCCTAGAGGACAAACTGCCAGTTGTCTATAGAACAGACAGGACTTGTGGGAGCATAGTGTGTTAAGTGGAGGCCCCTGAGCTTAGAAAAAGGGGCTTTCCTATTAGGCAGGAACCAAGAGAAGCACAAAGAGATCATAGTTTATAAATATGCAACAGACACCTCTGTTTGGAAGGAGGCACAACACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000233540:ENST00000450800:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCAAGGACACCTGCTGT
R:
ATGCTCCCACAAGTCCTGTCT
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains