HsaINT1012910 @ hg38
Intron Retention
Gene
ENSG00000188107 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr6:63788105-63789224:-
Coord C1 exon
chr6:63789058-63789224
Coord A exon
chr6:63788250-63789057
Coord C2 exon
chr6:63788105-63788249
Length
808 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTTTTTTTTCCCTTTCGAAGGTA
3' ss Score
9.59
Exon sequences
Seq C1 exon
GGTTGAATGGCGATGACTTCCTGGCTGTGGGCCTGCTCAATGGCAGTGTGGTTTATAGTTATAACCTGGGGTCTGGCATAGCAAGCATCAGGAGCGAGCCCCTCAATCTGAGCCTTGGAGTCCACACTGTTCATCTGGGCAAGTTCTTCCAAGAGGGCTGGCTGAAG
Seq A exon
GTAAAGAGTCATTCCTTCGTCACTTCCACAAACTGAGAGCACTAGTATATTGTCAGATCTGTGCTAAGATACAGAGGTGAATAGCCCATGATGCCTACATCCACGAAGTTCACAGACTATTGTACCAACTAGGGGAATAGAGAGATGATTACAATTAAGTGGTGTGAGAACAAATAAGAGGGATTACTAACACAGATAAGGGTGAGAGAGAGGATTCAGAAAGTGCTTCCCAGAGAAGGTGATGCTTGAGCGTAACTTCAAATAGGAGTTAAGAAAGAGAACAATGGCCAGTATTAGCTTAAGGAATGCAAGTAGTTCAGCATGGTTTTTAGGTTGGGGGATGGGGGAGCTAGAGAAGTGGTTAGAGACAGATAAGGTCTATATTATCAAAGGGCTTAGATGTGCTAAGAAGTTTATATTTTTATCTAAAGAACTATGAAGAGCTACTTAGGAAGGTGGGTACCATGTTGATTTCTAATTTTTGATAAAGGACTCTGGTGGTTCTATGGAGAATTGATAGCAGAGGAGGAAGGCTAAATGGAGGGGAATCAGCAGGATGCCAGCACCTAATCTTTGAAGAACTTTGATTTTGATTGAAATGCAAAACCATGACTGCTATATTAATATATCCCTGGTAACAGACACCAGCAGAGAAGCAGAGAATTGAGTGGTATCATGTTATTTCTTCAAAATTCAGGTCTTTGTAAATTTTTCATGCCAAGTTAATGGGAAATAACAAAAGAGTATCTTAACATTTCACCCTGGGGAATTAATTCCTTTTTTAATAGGTTTTTTTTCCCTTTCGAAG
Seq C2 exon
GTAGATGATCATAAAAATAAATCCATTATCGCCCCAGGAAGACTGGTTGGTCTCAATGTCTTCAGTCAGTTTTATGTAGGTGGCTACAGTGAATACACTCCAGATCTCTTACCAAATGGAGCAGATTTTAAAAATGGTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188107:ENST00000370621:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=FE(42.0=100)
A:
NA
C2:
PF0221019=Laminin_G_2=FE(36.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAATGGCGATGACTTCCT
R:
TGAAAACCATTTTTAAAATCTGCTCC
Band lengths:
310-1118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains