HsaINT1013479 @ hg38
Intron Retention
Gene
ENSG00000275395 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr19:39913690-39915789:-
Coord C1 exon
chr19:39915185-39915789
Coord A exon
chr19:39914258-39915184
Coord C2 exon
chr19:39913690-39914257
Length
927 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTCTTGCATCTCCACCCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCCTGTCCTGCCCTGCCAACAGCCGCTATGAGCTCTGCGGCCCTGCTTGCCCGACCTCCTGCAACGGGGCTGCGGCGCCGTCCAACTGCTCCGGGCGCCCCTGCGTGGAGGGCTGCGTGTGCCTCCCAGGCTTCGTGGCCAGCGGCGGCGCCTGCGTGCCGGCCTCGTCGTGTGGCTGCACCTTCCAGGGTCTCCAGCTCGCTCCGGGCCAGGAAGTGTGGGCGGACGAGTTGTGCCAAAGGCGCTGCACCTGCAACGGCGCCACCCATCAGGTCACCTGCCGCGACAAGCAGAGCTGCCCGGCGGGTGAGCGCTGCAGCGTCCAGAACGGCCTCCTGGGCTGCTACCCCGATCGCTTCGGGACCTGCCAGGGGTCCGGGGACCCACACTATGTGAGCTTCGACGGCCGGCGCTTCGACTTCATGGGCACCTGCACGTACCTGCTGGTCGGCTCATGCGGCCAGAACGCAGCGCTGCCTGCCTTCCGGGTGCTGGTGGAAAACGAGCATCGGGGCAGCCAGACTGTGAGCTACACGCGCGCCGTGCGGGTGGAGGCCCGCGGGGTGAAGGTGGCCGTGCGCCGGGAGTACCCCGGGCAAGTGCTG
Seq A exon
GTGAGCGACGTGGCGCCCAGGGCTGGGTGACGGAGCAGGAAATACCCTCTGAAGACTTGGAGTTCTGGATGGGCCTGAGGGTGGGGGAGGCCTGTTAGAAGATTTTATTTTTTTCGTTTTCCTTTTTCCTTTTTGTGCAGAACGGAGTCGCACTAAGTTGCCCAGGCCGGTCTCCAACTCCTGGGCTCAAGTGACCCTCCCGCCTCAGCTTCCTGAAGTGCTAGGAAGTGAGCTATGATCGTGCCACTCCATTCTGGCCTGGGTGACAGAGTGAGACCCCTGTCTCTATTTTAAAAAGGAAGCTAGTGGCTGGGCACCGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGCGAGTGGATCATCTGAGGTTTGAGACCATCCTGGCCAACATGGTGAAACCCCCTCTCTACTAAAAATAGAAAAAAAAATTAGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCTACTAGGGAGGCTGAGAGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCCAAAAAAAAAAAGAAAAGAAAGCTAGTATGGTTGCAGCAGCCTGAGTGAGAGGGACAGTGAGAAGAGGTGAGGCGAGGGAGGTAATGGGGAGATAGACAGATCATGTAGGTTTTGAAGGCCATGGGTGAGGGATTTGGATTTAAGCTGGTGCTTTAGGAATGAAGAGGGGTGAATGGTGAGCCAGGCAGAGGGAACAGCAAGTGCAAAGGCCTCGAGGTGGGACTGAGCGTAATATGTCCAAGAGAATAGCAAGGAGGTCAGGGTAGCTGGAGGTGAGTGAATTGAAGGGTGGGCCACAGAACTGTGAATACCCTGACCAGGTGGCCCTCTTGCATCTCCACCCAG
Seq C2 exon
GTGGATGACGTCCTTCAGTATCTGCCCTTCCAAGCAGCAGATGGGCAGGTGCAGGTGTTCCGACAGGGCAGGGATGCCGTCGTGCGCACGGACTTTGGCCTGACTGTCACTTATGACTGGAATGCACGAGTGACTGCCAAGGTGCCCAGCAGCTATGCTGAGGCCCTGTGTGGACTCTGTGGGAACTTCAACGGGGACCCAGCTGATGACCTGGCTCTGCGGGGTGGGGGTCAAGCTGCCAATGCACTGGCCTTTGGGAACAGCTGGCAAGAAGAGACGAGGCCCGGCTGTGGAGCAACTGAACCGGGTGACTGTCCCAAGCTGGACTCCCTGGTGGCCCAGCAGCTGCAGAGCAAGAATGAGTGTGGAATCCTTGCCGACCCCAAGGGGCCCTTCCGGGAGTGCCATAGCAAGCTGGACCCCCAGGGTGCCGTGCGCGACTGTGTCTATGACCGCTGCCTGCTGCCAGGCCAGTCTGGGCCACTGTGTGACGCACTGGCCACCTATGCTGCTGCATGCCAGGCTGCTGGAGCCACAGTGCACCCCTGGAGGAGTGAAGAACTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275395:ENST00000616721:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.3=39.1)
A:
NA
C2:
PF0009420=VWD=PD(48.4=40.0),PF087426=C8=WD(100=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTATGTGAGCTTCGACGGC
R:
CAGTCACTCGTGCATTCCAGT
Band lengths:
355-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains