DreINT0010754 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36556097-36558430:-
Coord C1 exon
chr15:36558081-36558430
Coord A exon
chr15:36556662-36558080
Coord C2 exon
chr15:36556097-36556661
Length
1419 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTATGTTTTTATTCCTGCAGATT
3' ss Score
10.93
Exon sequences
Seq C1 exon
TAGTGGCCTTGGCATCACCTCGCTCTTGCTTCGGCATCATCTGTAATGAGGATGAGGATTGCATGATGAAGGGTTCATTCCCCGTCTGTGTGAAGAAACCATTAGGAATCTGTTGGGCTATGGGTGACCCTCACTATTCCACATTTGACCAGCGTTATTTTGACTTTATGGGCACTTGCACCTATGTTGTCACCAAGAACTGCCAGAAAAATGACAGTCTGCCTGCTTTTGAAGTCCTGGCTAGAAATGAAAACCGTGGAGACACAAGAGTCTCCTATGTGGCACAAGTAACTGTGCATATCGGTGGCATCACAATCAGTGTTGACAGTTCTAAACCCGGGAAAGTCCAG
Seq A exon
GTAAGTTGAAGTTACAAAATCAATTAAAACTTAAAATGCATTGTGAAAGAACATTAAAAGTGTCTCTGATGTTTTAGCTCAAATTAACAAACATATAATTATTTATAGCAGGTCCAATTAATTACTTTGTAAGTGTGAGCATTAAAAAAACATTTTCTTTTTTCTTAATTTTTAATTCAAATAAGCAGTTGCTTCACTTCCCCCTTTAAGAAGATATGGACAGTTTAGGGGGTGTCTCAAAAGTGCAAATGATTCCATAAATGTATTATTGTAAATATTATTTATTTTTAAATATAGTGATTACTTTGGAAAACAAAAATACATACTGTAATGATAAGGTGACAACAGGGGTTGGATCCAAATGCAGCTTTTTAAGAGCATCATCAGGCAAACAAGGTTCAGTACAGGAGCAGACAGTAGCATACAGATAATTCAAAGAGTAAATGGTGTGACAGGTCAAGGCAGGCGGCACAACAAACATTAACATAAAACAAACAAAGGTTTAAAAACATGGCAAGACAATCCTGCAAAATGCTAACATAATGCACACTACAGTATAACACGATTAGATATCAGTGTGTCTAGTGTATGTATAATCCAAGTAATCAGTCCAGCTTCAGTGAGAACCGTATAAACGGAGGTCAGAGCCTGTTTCAAGTGGGTGGGACTTGAGCTCCAAGTGGGCTGTACAAAACTAGGTTTTTTATTTATTTAATGTCTTGTACATGACACAAAGACCAACATTGTGTTTTATAAATGTCTACACATGCCTCAAACCTAAACCTAACATCCCAATAACCTAATGTTTTTTATAAATGTCTACTCCACCTACACCACCTAAACCTAGCCCACCTGCAGCACAAGTCTCTCCCTCTTGGAGGTCACCCAAACTACTTGTGGTGTAAAACCTCCCACTTGGGGGCCTCCAGGCTGCAGCGATATCTACTCGGCTTAAGCTATGAGTGTGTAATCAGGAGGTGAACTGAAACAGGTGTGGGACTGCAGGACATGATGGGATTTGTAGTTCGGTAGAATGACAGGGAGTGTTTTCCAGTAGCCTGCAAGGGCAACACTGCTGGTGATCATAACACATATATAAAGATATAAATATATTGCTTCAGTGTTAGAAAGAGTGATGGTTTTTGATTTTTGAGTTTTTGTAATGTTTTTGAAATCTATAGCATCTAAAACAATTATAATATCTAGCAATATCATAATAGTTCAATCGAGCCATTTTTGGAAGGCCATTACTTTTTAACTTTCAGATTTTAAACATGCTTAAACATCTACATAACACACTAAAGAAAAACAAAACAAAATATGGCCCCTTAAAATTTTTCTTTTCTTTTCTTTTTTAATAAAACACAGCATAAAAATGAACTGTTTACTTTGATATGCATTATGTTTTTATTCCTGCAG
Seq C2 exon
ATTGACCAGATTTTGTGGAGCCTTCCTGTCATTCTTGATGATGTTGGAGTGAACATTTTTCAGTCTGGGAGTTTCGTCAGCATCCTTTTTTCTTTCGGACTGAATGTACAGTATGACTGGAGCCACTATCTCACAGTTTCCCTGCCTGCTGCCTTCATGAATAAAGTCTGTGGACTCTGCGGCAACTTCAATGGTGATCCTACTGATGATTTTACAATGCCTTCCAGCACCCAAGCTCCCAATTCGACAGTGTTTGGCCAAAGTTGGAAAGTCCAGAACTTAACACTTGATAAAGGCTGTAGAGATGATAATGGTGGCCATGAATGTGATGCTCAAGCACTTCAACAATGGCAGACTGAAAACTACTGTGGACTTTTAATGAAGGATCCATTCAGCCAGTGTCACTCTGTTATAGACCCTAATATTTACATCCGCAACTGTGTGTATGATGTTTGCATGGCAGACGGGAGCGGAAGCTACTTGTGTAAGGCGTTAGAGGTGTATGCAAGTGTATGTCAACGTGTTGGGATACAGCTAACCAAATGGAGAGAAGCAGCCAATTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=67.5)
A:
NA
C2:
PF0009420=VWD=PD(48.4=40.2),PF087426=C8=WD(100=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGTCTGTGTGAAGAAACC
R:
GGATGCTGACGAAACTCCCAG
Band lengths:
356-1775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]