HsaINT0063164 @ hg19
Intron Retention
Gene
ENSG00000090920 | FCGBP
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:13572]
Coordinates
chr19:40419597-40421696:-
Coord C1 exon
chr19:40421092-40421696
Coord A exon
chr19:40420165-40421091
Coord C2 exon
chr19:40419597-40420164
Length
927 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCTCTTGCATCTCCACCCAGGTG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCCTGTCCTGCCCTGCCAACAGCCGCTATGAGCTCTGCGGCCCTGCTTGCCCGACCTCCTGCAACGGGGCTGCGGCGCCGTCCAACTGCTCCGGGCGCCCCTGCGTGGAGGGCTGCGTGTGCCTCCCAGGCTTCGTGGCCAGCGGCGGCGCCTGCGTGCCGGCCTCGTCGTGTGGCTGCACCTTCCAGGGTCTCCAGCTCGCTCCGGGCCAGGAAGTGTGGGCGGACGAGTTGTGCCAAAGGCGCTGCACCTGCAACGGCGCCACCCATCAGGTCACCTGCCGCGACAAGCAGAGCTGCCCGGCGGGTGAGCGCTGCAGCGTCCAGAACGGCCTCCTGGGCTGCTACCCCGATCGCTTCGGGACCTGCCAGGGGTCCGGGGACCCACACTATGTGAGCTTCGACGGCCGGCGCTTCGACTTCATGGGCACCTGCACGTACCTGCTGGTCGGCTCATGCGGCCAGAACGCAGCGCTGCCTGCCTTCCGGGTGCTGGTGGAAAACGAGCATCGGGGCAGCCAGACTGTGAGCTACACGCGCGCCGTGCGGGTGGAGGCCCGCGGGGTGAAGGTGGCCGTGCGCCGGGAGTACCCCGGGCAAGTGCTG
Seq A exon
GTGAGCGACGTGGCGCCCAGGGCTGGGTGACGGAGCAGGAAATACCCTCTGAAGACTTGGAGTTCTGGATGGGCCTGAGGGTGGGGGAGGCCTGTTAGAAGATTTTATTTTTTTCGTTTTCCTTTTTCCTTTTTGTGCAGAACGGAGTCGCACTAAGTTGCCCAGGCCGGTCTCCAACTCCTGGGCTCAAGTGACCCTCCCGCCTCAGCTTCCTGAAGTGCTAGGAAGTGAGCTATGATCGTGCCACTCCATTCTGGCCTGGGTGACAGAGTGAGACCCCTGTCTCTATTTTAAAAAGGAAGCTAGTGGCTGGGCACCGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGCGAGTGGATCATCTGAGGTTTGAGACCATCCTGGCCAACATGGTGAAACCCCCTCTCTACTAAAAATAGAAAAAAAAATTAGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCTACTAGGGAGGCTGAGAGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACCCTGTCCAAAAAAAAAAAGAAAAGAAAGCTAGTATGGTTGCAGCAGCCTGAGTGAGAGGGACAGTGAGAAGAGGTGAGGCGAGGGAGGTAATGGGGAGATAGACAGATCATGTAGGTTTTGAAGGCCATGGGTGAGGGATTTGGATTTAAGCTGGTGCTTTAGGAATGAAGAGGGGTGAATGGTGAGCCAGGCAGAGGGAACAGCAAGTGCAAAGGCCTCGAGGTGGGACTGAGCGTAATATGTCCAAGAGAATAGCAAGGAGGTCAGGGTAGCTGGAGGTGAGTGAATTGAAGGGTGGGCCACAGAACTGTGAATACCCTGACCAGGTGGCCCTCTTGCATCTCCACCCAG
Seq C2 exon
GTGGATGACGTCCTTCAGTATCTGCCCTTCCAAGCAGCAGATGGGCAGGTGCAGGTGTTCCGACAGGGCAGGGATGCCGTCGTGCGCACGGACTTTGGCCTGACTGTCACTTATGACTGGAATGCACGAGTGACTGCCAAGGTGCCCAGCAGCTATGCTGAGGCCCTGTGTGGACTCTGTGGGAACTTCAACGGGGACCCAGCTGATGACCTGGCTCTGCGGGGTGGGGGTCAAGCTGCCAATGCACTGGCCTTTGGGAACAGCTGGCAAGAAGAGACGAGGCCCGGCTGTGGAGCAACTGAACCGGGTGACTGTCCCAAGCTGGACTCCCTGGTGGCCCAGCAGCTGCAGAGCAAGAATGAGTGTGGAATCCTTGCCGACCCCAAGGGGCCCTTCCGGGAGTGCCATAGCAAGCTGGACCCCCAGGGTGCCGTGCGCGACTGTGTCTATGACCGCTGCCTGCTGCCAGGCCAGTCTGGGCCACTGTGTGACGCACTGGCCACCTATGCTGCTGCATGCCAGGCTGCTGGAGCCACAGTGCACCCCTGGAGGAGTGAAGAACTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090920-FCGBP:NM_003890:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.3=39.1)
A:
NA
C2:
PF0009420=VWD=PD(48.4=40.0),PF087426=C8=WD(100=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTATGTGAGCTTCGACGGC
R:
CAGTCACTCGTGCATTCCAGT
Band lengths:
355-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)