MmuINT0063660 @ mm9
Intron Retention
Gene
ENSMUSG00000047730 | Fcgbp
Description
Fc fragment of IgG binding protein [Source:MGI Symbol;Acc:MGI:2444336]
Coordinates
chr7:28871135-28875178:+
Coord C1 exon
chr7:28871135-28871739
Coord A exon
chr7:28871740-28874610
Coord C2 exon
chr7:28874611-28875178
Length
2871 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTTCCCACATCTCTCTGCAGATA
3' ss Score
10.83
Exon sequences
Seq C1 exon
CCATGTCCTGTCCAGCCAACAGCTGCTATGATCCTTGCAGCCCTGCCTGCCCGCCTTCCTGCAACTCAGAAGCTGTGCCGACCAACTGCTCTTCTCGCCCTTGCGTGGAGGGCTGCGTGTGCCTTCCAGGCTTCGTGGCCAGTGGTGGTGATTGTGTGCCTGTCTCATCCTGTGGGTGCATCTACCAGGGTCGCCTGCTGGCCCCGGGTCAGGAAGTGTTTGATGATGACCGATGCCGCCGCCGCTGCACCTGTGATGGAGCCACTCAGAAGGTGACCTGCAGGGACACAACAGGATGCCCTAGTGGTGAGCGCTGCAATGTGCAGAATGGCCTCCTGGGTTGCTACCCAGACAATTTCGCCAGCTGCCAGGCATCTGGAGACCCGCACTATGTGAGCTTCGATGGAAAGCGCTTTGACTTTATGGGTACCTGCACATACCTGCTGGTGGGCTCATGCGGCCAGAACGCTGCGCTGCCTGCCTTTAAGGTGCTGGTGGAAAATGAACACCGAGGCAGTCAGACCGTGAGCTACACAAGAGCTGTGCGTGTGGTGGCCCATGGGGTAGAAGTGGCTGTGCGAAGGGAGAATCCTGGAAGAGTGCTG
Seq A exon
GTAAGTTCCACAGGGCAGGGAACCAGGGGGAGGAACCAGGCAGAACCTGAAAGACTATAGTTGGAGTGGAATGGGCTAATTAAAAAAAAAACAAACAAACAAAACAAACAAACAAAAAAACTTGTGGTTAAAGGAGGGGCACAGGAGCCCGGCAGTACCCTCTCTTCTCAGCTCTGACTTGTCTCTAGCCTTTGCATTTTGCTCTGAGGAAGTTAGGACATAGTAAGATGTTTCATACTAGGGCAGCAGCAGCAGAAGCAGCGGCAGCTCATGGTTGGGTGGCTGTGGAATTTGGATGAATTTATGCCTGCCTGGCCTTTAAAAGATGCCGTGGTGGTTCATGCCTTTAATCCCAGCGCTTAGGAGGCAGAAGCAGGCAGATTTCTGAGTTCAAGGCTAGCCTGGTCTACAGGGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAACAAAAACAAAACACCCTAAAAAACCAGAAACAAAAACAAAACAAACAAACAAACAAAAAGATGCCGTGGTGCCCATGAAGTGCACAGTGGATGTCAGCAGTTGCTGTCTTCTGAAATTTCAGAGTTGTAGGCTTATGCACTTTCTGGAAGATGACGCTTCACAGAGCAACGTGACAGATGAAATGTCAGTATCCAGGTGGGTGTGTGTGTTGAGGATGACACAGATCCTCATCCGGCCTCTGGGATGAGGAGCAAGATGGAGCAAGGCTTACAGGTGCCCAGGTGGTCTTCCGAAGGACCCAGCCCTACTGAGAGTAGAGAAGCACTCATTTTCTCTGTAGAATCCAAAGGTAAAACTGGGAAAGGGAGCAGTCGGATATTCACACAGTATCCCATTCTTATAACAAAGAAGTCTGGGTAACAGGTGGAGTTTGGCCTCTCCCCTAGGGAGTGGGATGTACACGTTGGAAACGGGAGACCAAGAGAACTTTCTGTGCTCCCGATCCTGTGCACCTCTCACACATGGCCCCCAAAGTGAAGAAAATGTTGCTCGCCAGCAAGAGTTTGGTACAGAGCTCCAGATAAGGAGAGGGAATAATTATTAATAGGTATTTGTTTTCTCACTTATCTGAAAAGACATTTGCCTGAGGCCTGTATACTAGTAGCTCAATACCTGAATGGACAGCACACGCTCACCCACCTCCTCCTCTCCACAGCAAGGAAGGAAAGTTCACTCATCTTTGCCTGACAAAACTGAAGTAGAGAGGTTGAGCCAGCCACTGCGGCTCACAGTTATGTGCACCGAGAGGACCTCAGTGAGTCTAAGATGCTGAAGAGTGAGAATTTGGAACCCAGGTGTTTTGCTCTGGAGTTCATACTTTCAAAAAAAAAAAAAAAAACAAACAAAAACCATTTTTTTTTTTAAACAACTGGCGGTGGTGACACTTGCCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGCAGTTCTTTGTGACTTTGAGGCTAGCCTGGTCTAAAAAGTGTGTTCCAAGACAGCCAAGGCTACTAAGAGAAACCCTGTCTCAAAAAACCAAAAGAATAAATGAATATATTATATTATTATTTTAACTGGGGGAGGGACACATGGGCTGTGAACAAAAGTCCCAGAGGGGCCCACAGGTCTGGGATCCCTGTGGTCTGGGCTTACAGGCTGCCCAGGACAGATGTGCTGCCCTCCATGGATCCTGAGAACTTAACTCAGTCCTCGTGTCCTCTGCAGAAGCAGTTCACGCTGCTAACTACTGAGCCATGTCTCCAGCCTGCAGGAGTTTTTTATAGTCTGTCACCTGTCCTGAAGACAGACAGGGAACCGACAGAAAGGAGTTCCAGGAGAACGGGACAGCATGTGTAAAGAATAAGCTTGAGGGGTGAGACTCAGCAAGGACGCTAGTGGGCGTGAGTGAGGGAACCAGAGGCGGTGAGCAAAGAGCCTAGGCAGGGGCTAACTATAACCAAGCCTTTGGATTCAGAGCCTAGGCAGGGGCTAACTATAACCAAGCCTTTGGATTCAGAGCCTAGGCAGGGGCTAACTATAACCAAGCCTTTGGATTCAGATGAGGCCTGGAGAACAATGAAGAGGCCACCAGGTAAACAATGACCTCCTCAGGGCAGAGGGAACTGCAAACATGAAGCCGGAGGCTGGGTAGTCTTGAAGAAGATAGAACAGCACCCAGGTGACAAGAATAGCCAGTCACGCTGGGAGGTCCACGCTGGGAGGTGGCGTGCAGAAGCAGAAGCAGGCGGAATTGTGGGTCAGAAAGCTGGGCATGGGTAGGGCCAAGTGGGTAGAGAATCTTGCTTTTACACAGGATGTGAAGGAGACATTGGCAGCTATGGATGTGGAACTCAGGTGTAGGGGTGAGTGAGAGTGTCATAAGCAGGGGTACAGCAAGGAAAAGAGCCCTAAGTCTGAGCTCTGAGTTCAAGCATGTGTGTGGCTTGTATGGCTGGGATGAAGGGGTAGGGCTGAGCTGGGAGATTGAATAGGGACCAGTGGGACTCAGATCATCTGGGTCTTCTGAGGCCGAGCTGAGAGGTTTGGCTCAAGCCTGGCATTGAAACACAGAGAGCAGGGAGCAGGGTGGGGGTGGGAAGCACTGTTCCAGAAAGGGTTAACCAGAGGCAGTGCAGTCTGTGCGAACACACTAAAATAAGTTCCAGGGAGACAGGTGAGGTAGGCTTTGAGAAGTAGCAGTCAGAGATTTGGGTTGGAGTTTCAAGCATAAGGGGTGATGGGTGGCGTGGTAGACAGAGGGAACAGCCATCATGAAGTCCTGAGGTGGAACCAAGGAGGGGTGGGGGGCAGAGCCAGCTGAGTGAAAACACGAAAACCCTGACTGACCTGTTGTTCTTCCCACATCTCTCTGCAG
Seq C2 exon
ATAGATGGCGTCCTTCAGTACCTGCCCTTCCAGGCTGCAGGTGGGAAGATTCAGGTGTACCGCCAGGGCAATGATGCTATCGTGAGCATAGACTTTGGCTTGACTGTTACCTACAATTGGGATGCTCACGTGACTGCCAAGGTGCCCAGCAGCTATGCTAAAGATGTGTGTGGGCTCTGTGGGAACTTCAATGGGAACCCAGATGACGACCTGGCTCTGAAGGGTGGAGGCCAAGCTTCCAATGTATTGGACTTTGGGAACAGCTGGCAAGAAGAGATAATACCTGGGTGTGGAGCAACTGAACCTGGTGACTGTCCCCAATTGGACTCCCTTGTGACCCAGCAAATTCAAGACAAAAAGGAGTGTGGAATCCTTGCTGATCCCGAGGGTCCATTCCGGGAGTGTCACAAGTTGCTGAACCCCCAGGGTGCCATACGTGACTGTGTCTATGACCTCTGCCTGCTGCCTGGTCAGTCTGGGCCACTGTGTGATGCATTGGCAGCCTATGCTGCTGCATGCCAGGCTGCCGGGGGCACTGTGCATCCCTGGAGGAGCGAGGAACTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047730-Fcgbp:NM_001122603:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.2),PF127142=TILa=WD(100=28.7),PF0009420=VWD=PU(50.6=39.1)
A:
NA
C2:
PF0009420=VWD=PD(48.1=39.5),PF087426=C8=WD(100=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: