HsaINT1014025 @ hg38
Intron Retention
Gene
ENSG00000250208 | FZD10-AS1
Description
FZD10 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:48632]
Coordinates
chr12:130155352-130162223:-
Coord C1 exon
chr12:130161962-130162223
Coord A exon
chr12:130155783-130161961
Coord C2 exon
chr12:130155352-130155782
Length
6179 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGTCTTTCTCTTTTCTATAGGGC
3' ss Score
9.63
Exon sequences
Seq C1 exon
AGCCCGCCTGGCGCGCGGGGCTCTGCGCGCTGCGACCCTCCCCGGCAGTCCCGCCCGCCTCTCCTCGCCCTCTCTCTGCCTGGCCTCCAACTTTGCCTCTCGCTATCCTCTCCGCCGGCGCCCCCTTTCCCGGCGGTCCCCGGGATGGTCCCCGGCACCCCGAGGACGCCGAGGTTACGGGAAGTTCGGGGACTGGCGGGAGAAGGGGTTTGGGGGTGGTCCGCGGCGAGGGGCGCGGGGTGCATCTTCTCTTCCTTTTATG
Seq A exon
GTGAGTCCCGGGCGGAGGGCGCTTTCAAAGGGAGGTGGGATTTGCGTTTTATAGCCTGGGCCATAAAGTAGGCCCTTGCTTGTAAACCTGCCCGCATCTTCCTGAGGCTGGGGAGGTGCTACCAGCCCCGGGCTCCGGGCTCCGAGGAGGGATTTTCTTTGAAATTTCAAAGAGACGAGCTAAGGGGAGGGGGAGGGGCTCGAGAATCCGGATTTTAGGGCCGCTCATCCGAGGTCTCCTCTAAGAAGGCGGGAAGGGGGAGGGGCGGGAAGCGTCCCGGGACTTTGAACACCGCCTCCCACCCCGCGGGAAGTGCGGGCTTGGTTTGTACCGCGGTGACCCCCGCCCCCTCCGAAGCCGCAGAGCCGGGGCCTCGCGCCAGCAGGGCTGGAGATGCCTTCTTGGCGGCTGAGTTTATTTATTATAGGAAGTCATTCGCTCGTGGGGTATTTATGTGATTTGGCGAGTGATGTGCCCGGCCAGCGCCCTCCTTGGCTGCAGCCCCGCAGGAGGACCCGGAGTAGGGTGGGATGGAGTGGGTCGTGGGAGGAGCGCGTCAGCGCCTGCCCGGGGACCCCCAGCTCCCGCGAGGACACGGAGGCGCGCACGCCGCTCGGTTTTCCTGGAAAGTGGAGAAGGAGCGTCCTGGGCAGGTCCTCTGAGCTCATCCCCCCTCGGATTGGGGCGGGTCTGTGACGGGGTCACTTAGGACACGACGTCCCCCCGCCATTCCCTTCCCCCGCCCAGGGCGTTCGCGGTGGGCGCCCACCGCCAAGCCCCACTGTTCCCAAGGATGCGCCAGGTGCTTCCCGTAGCGTCCTGGGTTGACCCTTAAAAAAACAGCACCCCTAGGAGGTGGCCGGCCCTCTCCTCCCAGGGTCTCTCCGGGTCACGATCTTCCAAAGTTCGGAAACTCGCAGGATCGCGTGTGCAATCTCCCGCTACCTCCCGGGGGGCCGGGGAGAGGTCAGAGGAGCGAGTCCCGCGTCCACCGGCCTCGCTTGCCCCCTGCCCGTTTGAGGATAGTTCCAGGGAGCAGGGTGGAGTGTGCGGACATCTTTGGAGGCAGTGCTGGGGCTTCCCGCGTTGGCGGCGCTCCACCCGGCGTGGGGGGCGGCTGCACGGGCCCCCGCGGTGGGGACGCTGCGCACGGGGCAAGGTCTCCCTAGGAAGCGCCCGGGAAGGAGATGGGGCCCGCCAGGAACCCCCCTCACTGACCAGCTTTCTGCACGCCGTGCAGGAGGGGGCCACTTCCTCGGAGAGTATTGGCTTTTAATTAAAACAAGCCCTACAATTTTTACATCGGTAAGAAACTTGGGGAAATCTCACCTTTCCACTCATTCATTCATCCGTTCAACAGACATTTGAGCGCCCAGAATCCCAGAATTAATAGGCAGGTTCAGGCACCCACCCCTGGGTCGCTGTCCCTGGGTGTCCTGGGTCTCACTAGGAGGTGCTGGAGGAAGTCGGGGTGAGGGAGAAAGTGAAAAAGAAGGTAGAAACTCCGGGCAGTTAGAACACCACCTTCAACTGTGTTATTTCCCAAGTGAAAAGTTGCATGATTTTATTTTTGAAAGACTGCCATTTTTATTATAGTGTTTTTTTTTTTGTTGTTGTTGTTTTTTGTCTAGTGAGTAATTTTTCAGGACCTTTAAATTAAAATTAATTCAGCGGAAATCACTTGGCTTTTCTAGAATTTTCCTGGCAAAGGTCCTTCCTGGGCCCTATTTTCCTTCTTTTCCTTTTTGTGTCTCTCCCTCAGCAACTATTAGAAATATTTAGTGCAAGAGTGAGAGCCAAACGCCGGGAGCTGGGTGTGAGCTATTTGAGAAAGTGCCTCCTAATTGATCTTTTCTGTGCTGTTTTAATTCAGCCACGTTCAGGCCCATTATTTTAGCTATAACCACTTCAGATTGCCTTTTTCTCTCGTTTTTTATAAAAATGTCTGCAGAAGTGCTTCGCCCTGTCCAGCTGAGATGGAAACCAACAAATAGACTTTATTATAGAGAAATGAGGGTTCTGAGAAATCAGCAACTGGAAGATAAGTCTGTAACTAATAAATGAAAAGGCTCTTTTGATGGCCCCAGCTGAAAAGATATTTTATTTTATTTTTTTTCCTGTGTGTGGGATTTGAGATGTGTGAGTCTAAGGAGCAGCCGGGGTCCCCCGCTGCTCAGCCCTGGCTGGCAACCGACCCCCCTCTGGCAAATGTTATGGAGAATTGGGAGGAATTTTATGGCTGTCTTTCCCTCAGCTCTTTTTTCTTTTGTCTTCTTTGAAGAATGACTTTAGACATTTTATTTACATATTTAACCATGGATGAAAGACGGAAAAGAAAGCTTTGGAGCCGTCGTGGGAATAGTGATATGTTTAAATTAATGGAAATCTTATTAGGCTTCTAAAATTTTGAGCAAAGATTTTTAATGAAACTTTATAATTAAACATGATTTCACATAACGTGCAGAGACAAGGAATATGTTTTTACCCCCAACCACCTAAAAATGTCTGTCTATCGGAAAGCTATCAGTAAACATTATCCGCCTTCAGGTTCTTGCAAACGTTCACCAGGGAAAGTATGAGGTTTTTGAGAGAGAATATTTCAGGAGTCAGGCAGTGTTTTGAACAAGAACTAAATATTTTTTGGAGGTGGAGGGGAATTGAAAGAGAGGCCCAGTTTCATTCCATTTAAACTCACAAAGTCAAAAGTATAAAAGTACTTTGACACGGATATTGCTAAAAATCAAAGTTGTATCTTTTCTTATTATGTAATAGTCAATGGAAATTATAAGCACTGTGCGAGGTTTTCTGAAATGGGATTAGAGAAAACCCAAATAATCTCTTTAAGATAAAAAAGTACTGAGTCTTTCAGCAACAGAAAGAAATTAAACCATAAGCTTAGCATGTTACAAGCTAATTGCAAGAGTAAACTGGTGGCATAGGAAGAAAGCTCATAAACAGAAGTAAAATCGTGCTGGTGAATGTTGAGATAAAAAGTGGTTCAGGCTGTCGCAACGCCTTTCAGTAGCTGCTGCTTGAATCACCTCTCTTGGTACATTCAAGTGTGAGGATCCACGTAAGTGATTCTTGTGTTTCTTCTCTTGTCTTCTCGTGTCGTCAATGTTTGTATTTAGTCCGGGACATTTCCAATTCTACCTTCAAGTATGAGAATGAAAACTGATCTATTTACCAATAATTGCTTCACATGCAGGGAAGTCTGATGTGAATAGACCTTGTTTTCTCTGACCTCATCTAGTATCAAGTTTCTGCAGAAACTTATCAGATATAAAACATGCACAAAAAATTATGTTTTCTGATCAAGTAGGCATGCTCCCCGTGGCGTGCCCCCATCTTTTTCTCCAGGGAAAATACCTTTAGTGATCTGAAGTGATACTTAGCAAAGAAAACACAGTTTGTACCACCAGAAAGGCCATGCAAGTCGCAGCGAATTCAACAGGCGCAAAAGTTTTAATTCTGCCTAAAAACACTGGCTGTGAGATGTGGAGGTTTGGGGGAAGGTGAGAAATGAACCCCGAAGCACCCCCATCCTAAAGTGGATGAGTGGGGTGTCCAGTGTGGCTCCAGCACAATTTAGGCAGCTATTTTAAGGCCACTTCCCTTGAAATGTGGTTTGAAATATTACCAAAGGTTCCACGGGGTGCACTAGTGTGAATTGCAAATCAGAGCATTGATTTAATCCTCTTTCAAGGCCGGGCTTTGGATCGCTGGCGTCGACTGGCTCCCCACTGCTCCTGGCTCAGGAGGGACCATTCAAGGGGGCAGCTTCCCGCCTCTATTCCCACACTCCAAAAAACAACACCGCAGACAGACACCCTCCAACTAAATTAGATTAAACTCCTTCTCTTCCACAGCGTATTAGCCTTTTTGCTGCCCAAGCCTCCTTACGCAGCCCCTCCTCATTTAAAGACACAGATTTCTTTTTCATCTCTGCAACTGCAACAACAACAAACACAATCATATATATATATATAGTGTGTGTATATATGTGTGTGTGTGTGTATATATATGTGTGTGTATATATGTGTGTGTATATATGTGTGTGTATATATGTGTGTGTATGTGTGTGTATATGTGTGTGTATATATATGTGTGTGTATATATGTGTGTATATATGTGTGTATATATGTGTGTGTATATATGTGTGTGTATATGTGTGTGTATATATGTGTGTGTGTATGTGTGTGTGTATATATGTGTGTGTATATATATGTGTGTGTGTATATATGTGTGTGTGTGTGTGTGTATATATATATATATATTTTTTTTTTAAAGAGATAAAGCCAGCCTTCTAAGTGCTCTTACATGGCAAGGACGTTATCTGTTTAAAATCCAGGAGGGCGTCGCCTACCTGTTCTGAAACTCAACAAATTAACCCTTAACCTGGGGCAAACCTAGAGCCTATTCACAGTGCTTCAACCTGCAATTCTGTACTGGACTGTTTTTGGAGGAATATATGAGAAAAGAAACATCACAGAATTCCAGAAACACGACACAAAAGAGTGTGTGCGTGTGTTGTTTTGGTTGGTGTTTGTATTCCAAACAGCTTGAGCGGACAGCTTATCGGAAGCGCGTGCCCATTCTGTGAGTTCAGACTTCATACCTGGTCTTCATTGCTTTGCTCCTTGTCCCCTCCCTTAGCTGTTTGGGATGTGCTGATTTAATTACTCCCCTTCCCATCTGTTTTCTTTCGGCTTCCCTCCTGCACCCTGGGACCCTTTTGCCTGTTCTGGGAGCTGAGTGGGTCAGCTCATCACAGGCCTGCGGCCCCTGCATGGGTGACAGAGGAGGCAAAGATGACACAGAGAAACTATCCCTTCAGGGACAGAGTGGGGACACCCACGAGCTTGGCTCTGCCTTACAAAGAAATGAGAAGGAACCCCGTTCCTGCTTTTCACCTTAGGTGAGCTCTGAATCTGCAGCCACTCACCAAACGCCTGAGCAGCCCCGCACCACAGTGATGATCTGGGGAGGAAACGACCCGGATGCCTGGGTCTGAATCCCCCTCTTCCACTTTCTAGCCCCATGACCTCAGATATGCCACTTCTAATTGCTCTGCCTCGGTTTTCTCATCTGCAAAATGGGACCAGCAGAGTTCCCGCTTCCCAAGGCACGATGAGGATGATGTCATAACACACTTGGAAGCGTTGATGGCAATACCAAGCACCAAATAAGTGCTCAGTGATGAGTAGCGGTTATTATTGTTGAAATGCAATATAAATGGAGGGAGAGAGCACAATAAGGAGAGGCACTGGAATGTGACATTTGTGGGGAGGAGTTTGGGGACATGTCAGTGTCAGGCACACAGTAATACAAGCTGATAATCAAGGCAAGCAAATAATCAAAAGGCTAACAAGAGCCGAGGCTGACTAAGCATTTGACAGGTGCTGCCTTAAGCCTTGATAGGAAGCAGCTCACTGCCTCCTCATAGGTACCCCAGGAAGCTGGTCCAGAGAAGATTTCCATTTCAGAGAGGAGCAACTGGGGCTGGGGAGTCCGAGTCACTAGACCCAGGCCACGGGGCTACTGGGGGTAGAGCCGACACCATTCCACTCCCCCAGGGGCTCAGCTGCCTACGCCTGGCCTCCTGCCTCTCCACGGAGATGCAAGCACAGTGGGTACTTGTGATGGAGCCTGACTTTCAGAATGGGACCCCGTTCTGCTGTCCTGTCTGGAGCCAGGCAAAGATCAAGTCTTGGTTTATGGCTTTGTTCAGGGGCTCCTGGCCTGGGGCGAGGCTGCCACTTTCCTGTCATGTTGATATTCCCCGTGATGGTGTCTGAAGGGATTCTTTGGAGCCACAAACAGGGAGGAAATGGCGGAAGAAGCAATGTGGGAGGTATTAATGTGTGTTGGTTTACCCATGTCCTCAGCTGTGTGACCCCAGGCAAGTTACTTAACCTCTCTGAGATTCTTTCTGTTTCCTCTGCTGTAAAATGGGAACAATGACACTTACTTGATCAGGTTCGGGGTAGGAATGAAGTGAGATAACTCAGTAAGCTCTGAGAACCGAGTTGGCACATAATGCTAGCCCTGTGGGATTCACTGGTCTGTAAACTTTCTGGTTAGTTGACTTTTCTTTGTTAAATTCATTTGTCTTCACTGGCCGGAAGCCAAGATGGCTTACTAATAGCATCACTTACGAGTCTTTCTCTTTTCTATAG
Seq C2 exon
GGCTGCCACACTTGTGTATCCCTTCTTCCTTGAATTTAACCAGGAGTGAGCAGTGGACAGCTTCTTCCCTATGAGAAGGAGGTGAAGCAGGACCTGAAATCCCGTGCTCAGCTCCCACATGCCCCGTGTCCAGGACAAGTCCTTTGCTGAATCAGCGGCAGACACCACCCGGAGCCCTGCGGGAGCCTTTCCCTGTTCTTCCAGCATGGATCTGAAACTCCCTTCCCACTTTCTGCAGCCTCCCAGAGATAGTTCAGGCTCCAGCCTCATGTGATAGCATGAAGAGAAACTGGTTCCAACAGCTGTGTGCTCTGCTGCCCTCATCCCAAACAACAGTTTAAATGCACAATTACGCTTTTCTCTAAGGCCCAAAATAGGATAGGAAAGATCGTTTTGCTATCCCTGAATGCCTGTCACCCTTGTTTCGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000250208:ENST00000505807:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains