MmuINT1002615 @ mm10
Intron Retention
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:128594208-128600687:-
Coord C1 exon
chr5:128600537-128600687
Coord A exon
chr5:128595765-128600536
Coord C2 exon
chr5:128594208-128595764
Length
4772 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GGTTATTGTTAACTCTCTAGGCC
3' ss Score
6.08
Exon sequences
Seq C1 exon
AGCCCCAGCTTGGGGCTGGACCCCAGCCTCCAGCCTCACCTCCTGCCGGCCTCTCTGCTTGCCCTCCCCGCCCCAGAGGGGGGGTGGGAGGCCTTGAGATTGTCCCCGGTACCCCAAGGACGCCGAGGTTACGGGAAGTTTGGGGACTCGG
Seq A exon
GTAAGGGTGGTCCTCACCCGGGGTTGGGGGCTGGGGACGCATCTTCTACTTTTACGACCGGGCCCTGGCGGAGGGCACTTTCAAAGAGACACGGGATTTGCGTTTTATGACCGTGCTCATAAAAAAGTGGCCCCTCGGCTTGTAAAGCTGCCCGCATCTTCCCGAAGCCGGGGGTTTGCTGCCCGGGGCGCGGAGCTCGGACTCCGGGGAGGGGCTGCCTTTGAAATTTCAAAAGGGCCGAGTGCAGGGGAGGGGGAGGGGACTTGGGAAGCCGGAGTTTAGGGCCTCTTCTGCAAGGTCTACTCAAAGAAAGAAGGGAGGGGGCGGGGAGGAGACTTTCCGGGCCGCTGACACCCCGCACCCCGAGAAGAGGGGCTTGGCTTGAATCGTGGTGACCCTTGCCCCGCCAAGGCCACCGTGTTGGGGACCATCGCGCCAAGCCGGCTGGTGGTTTCTCCAAGCGGCTGAGTTTATTTATTATAGGAAGTTGTGTATTTATATTATTTGGCGAAAGATGTGCTCGGCCTGCGTCCTCCTGGGAGGCGGAGGCTGAGCCCCGGCCTACACGCGCACGGCTGGTTCCCACGCAGAGTGGTGGGGCCTCTCCGTGCCTTGCTATGCTGGCTCCTGCCCCTTGGTTGGTTTTGGGCTAATCTGTGATAAGGACACAGAGCTTCAACCTCCTTCCCCCGCACAGGGAGTGAGTGCACCATGGGAGCCCACCGCAGTCCTTAGATGTCCGAGAGATCTGGGGTGCGGCACCTGTCGCGGACTCTTGGCTTTGGATAAACAGCCCTCAGGGCGGTGGCCCACTCTCTCCTTAGACCCCACCCCACCCCCATTCAGGTCTGCGTTTTAAGTGTCTGGGAAACTACCAGGACCTCCAGTGCGGACTCCCCCAACTGCATAGGTGCAGCTAAGTCCCCTGCTCATCTTTCGGCCAGTCAGTCTTGCGCACCCCAGGGCCGAGTTGGGTGCACAGATGCCTGGAAGCCTTCAGTGGCTCCAGCCAAGCCAGGAACGAGGCTACCCAGGACCCCTCCTCCCCGCCCTGCCTTGCGCTTCCTGCAGAGGATCGACTTCTAATTAAAACAAGGCTTCAGCGTCCCATCTGCAGGGAGTTCTTCCTCTTTACCCCCCTTTCATTTGTCAGACATAGCGGACAGACCTGAGGCTGGGACACTCCCAGGACCTGCTGAGTCCTGGGGGTGGGGGGCGGAGGGGTGTGCACAGGCTCATGCCTCACCTTTAGATCCCCTGGTCCCCTCTGCCTTTCACGGGAGGAAGTTGGATCCGTGGAAACAGCGGTCCGGAAGACTGAGGTTAACACAGTCAGAATCACCACCCACCACCGTGTTAGTGACCCAAGAAAAACCTGCGGTGTGGTGAACGCTTGCGGCTTGGATAAGGATGGTTTACTTAGATATTTATAGTTTAGTACGCTGTTTCCAAAACCTTTTAAGTCAGGTAAGATTCTTGGGCTATCGCTTAGCTTTAAGACAGACTAGTTTGCAAGGGGTCCTTCCTGACACTTTTGCCTTCCGTTTTCTCTCTCTCTCTCTTCTAATTCCACACTCCCCCCCCCGCCCCTTGGGGCGTGGGGGGCGTGGAAGTAGCCTGGGTGAGCTCAGCTCCGGAGCAGGGTGTGAGCTATTTGAGACTGCCCCACGTAATTGGTCTTTTATGCTCTGGTTACTTCTACAGTGTTCCGACCTTTTATTTTAGCTATGATCACTTCACGTTCCTTTCTTCTCTCCCCCAACCCCCGGGACTCCCTTAAAATATATTAAGAGAAGAAAAAGCTAACAGAATTTCTTCCATCTGCCCAACCTAGTATAGAAAAAGAAAGGAAAGCAACAAATAGACATTAGTATCTAAAAATAAGGGCCCCGAGATAGCGAGAGTGGAAGGCAACGCTAATAAATGAAAGGACCCCTTTGATGGCTCCAGCTGAAAAGATATTTTATTTTTCTCTCTCCTGTGTGTGGGATTTGAGACGAGTGACTCCAGAGCAGCCGGGTCCCCTGCTGCTCAGCCCTGGCTCGGAAACCGGCCCCCCTCTGGCAAGCGTTATGGAGAGCTGGGAGGAATTTTATGGCTGTCTCTCTCCCCTCGGCTCTTTTTTTTCTTTTGTCTTCTTTGAAGAACGACTTTAGACATTTTATTTACATATTTAACCAGGGATAAAAGAGGGAAGAGAAAGCTTTGGGGTGGGGTGGGGGGGACTGGCCTGGGAATAGAGCTATGTTTAAATTAATGGAAATCTTATTAGGTTTCTCAAAATTTGAGCAAGGGTTTCTAATGAAACTTGATAATTAAACATGATTTTAAATAGCATCCTAGAGCAAAGGGTACTTTGGACCCCAAATCTCCTAATATATCTATCTACGTGAGATTTCAAAATACTGTCTGTAGATATTAGCGTAGAGTTCTTGCAAATGTCTACCAAGGAGAGTGCAAGGTATTCTGGAAGGAATACTCTTTAAGAGTCAGATGGTGTCTTGAGTTAAATAATTTTGGAGGTGGTGGGGAGTTGAAAGGAAGGCCCTGTTTAATTGGTAAAGTCAGAAGTTAAAAAAAAAAAGAAAAGATTCTCTGCCATGGGTCTCAGTGGTAATCAAAGCTGCATCCTTCCTCAGTATGGGTGAAGGAACCATAAAGTCTTGAGAGGGGTTTCTGAAATAGGATTAGAGAGAACCCAAATAATCTCTTTAAGATAAAAAAAAAAGTACTTCGTCTCCTACAATAAAGAAAAATTAAGCCAGAAGCTTAGCCTGTTACAAGCTAATTGCAAGAGTAAACATGTGGGGTATGGGCAGAGATTATAGAAAGACATGAACATCCTGTCTCCCAGCCTGAAGATGAACCAGGGAGCTGGCTCCTTAACGTTTGTCTTGGTAGCTTCAAGGCCATTTCTAGAACTTTCCTATTTGCGGATCCAGTTGGAAAGCTCTTAAGATCTCTGTTTGCATTTTCCAAACTGTTCCTTACAGTAAGGAAAGTGGTCTGCTTACTGGTAATGGTCTCTTTAAAAGGCACACATTGAGAATTCAGTTTTCCAACCCACTAGGCTTGGTTCCACGACTGCCTCACAATCCCCCCCCCCCTTTCGGAGGAGATATATTAAAGTCATCCAAAGTGATGTTTAGTTAACACACACAAACATATGCTCCAAGCATAAAACACACACACCTCATACCACAAAGCAGTGTAGGTTGCCCCAAACTTAAGAACAAGTTTTAATTACACTTCAGCACATGTAAGATACGGGGTGGTTGGGGGTGGTGAGGCGCAGAGAGAAAAGGCCCTTGGCCCTCTGCGTTATAAAATGCATGAAGGAGTGTCCGGGCCGCGGCAGAACAATTTAGGCCGCTATTTTAAGGCCACTTCCCTTGAAATGTGGATTGAAATATTACCAGAGGTTCGCGGGGCGCTTTCGTGTGAATTGCAAATCAAGCATCGCTTTAATCCTCTTTCAAGGCCGGGCCTTGGATCGCTGGCGTCGCGCGGCTCCCCACTGCTTCTGGCGCAGAAGGGACCATTCAAGGGGGCAGCTCCCCTCCTCTGTTCCCACACTCCAAAAAACAACACCGCAGACAGACACCCTCCAACTAAATTAGATTAAACTCCTACTCTTCCACAGCGCATTAGCCTTTTTACAGCCCAGGCTTCTGCTGATCGCTCCTCCCTGTTTAAAGACACAGCACAGCTTTTTCCGTCTCTGCTACCTCCACACAAATGTGTCGGGGTGGGGATGGGGAGGGCAGTGGGGAATAATCTTTAAAAAGGTGTAAAGTGCACCAGGCTAAGTGACTTCGGATTGCTGGAGATACCTCTGTTTAAAACACGGGCAGACCCACGTGTGCCCCCTCCAGGGCTTTCAGGAACCCCCCATGTGAGCAGCATTTAAACCCTAGTATATAGAGTTTAATTTAAAAAAATAAAATAAACGAATAAATAAATAAATAAACAAACAAGTAAATAAAATTTACAGAATTACCTCACAAAATGAAGCAGGCAAACGTGATTCTGTTTTGCATTAGTGTCCCAGAGGACACCGGAAGACAGTTTGCTGAAATTAACAGCCACTTCTACAGTTATTCCATGGGCTCATGCGACTGAGGCCTCTGCCCCTCAGCTGCTAGGCCAGTGCCTTTCTTTGTCCACCACCCCAGCTACCGCTGCTTCTTTCAGCTTTATTCATTTCTTCAGTACCTGGGTTTTCCTAGTCTGGAAACTGGTCCGTCATCCTCCCTGACACAGTAAACGGGGGAGGGGGGGGGGGAACTTGGACACAAAGCTGGGGCAACCTTAAGCTCTACCTACCATCACTGGGTCTGAAAATCCCTCTACCACTTTCTAGAGCATTGGTTCTCAACTTGTGGATTGAGACCCCCCCCCCCCTTAAGGCCCAAGGGTCCTTTCCTAGAGGTTGAGTATCAGCTATCCCACATAGAAGATATTGATGTTACAATTCATAACAGTAACAAAATTACAGTTATGAAGTAGCAACAAAATAATTTTATGGGGCGAAGGTCACCACAGCATGTATTTACAGGGTTGCAGCATTAGCAAGGTTGAGAACCGCTGGTCTAGAGCCACCTGACTAGGGCTGAGCTATTCCGGATTCTGGGCTTTGGTTTTCTTACCTGAAAAATAAGATCCAATCTAGTAAGGCCAGGCACAAGGCTGTTTCCAAGATGACAGTTTGTGAAGCACAGTAAATATAACCCGGGCATCATCCTGGTTGATGGTTATTGTTAACTCTCTAG
Seq C2 exon
GCCCCAGGACCATGTAGGAGACGCTCCTCAGGCCGCTGCTGTTGTGCGGGAGTTTTCACATTAGGTTAATTGAAGTTGGAAGACTCACCCTAGCTGTGAGCAGCACCATCCATAGGACTGAAGAAAAAAGGAGAAAGTGAGCCAAACACCAGCATTCATCTCTCTCTCTGCTCCCTGCCCTGAAGCAAGATGCAACGTGAGCAGCTACCTCACAAACGGGTTACTGTGGCTCCCCACCATGAAGGGCTGTGCCCTTCAACCGTGAGCCGAAATAAGCCCTTACATAGTTGCTTCTTGTTGGTTAGTCTGTCACAGCAAACTAATAGTAAGACAGAATCCCAGAAATCCATCATTTAAAAGCCAACGTGAGTCACTTGGACAGCGAGCCTTTGGTACATCCGGCTACTTACTGAGCTCCTGGGACAAACTAAGATACTTGATTGTACAGGAACTGCTGAAGCAAGATGAGGAAGGAGCCTCTTCATTTCACAGATGGGAAACTGAGTCCCGAGAGTCACGTTATAGCTGTGATCTGAGAAGCCCCATCTGGTTCAGGGGTCCTGGGTGACATCTGCCTCGGAACAGCATGCACCCAGGAAATGTCAGCAGCCAGCTGGGGTTTCCAGGAACAGACCCTGTGGAGCTGTCATCGTTCCTCCTGGACGGAGAAGCATCTGTGTTCTACAGTCTCTTAAGAGGGCTGTTCAAAGTCAGAGATTGAAGGGGAGAGATGTTTATTTATGACCTCAGCTGTGGCATCTTAGGCTGGTTACTTAACCTCTCTGATCTGATTTCTGTTCCCTCTGCATTAAAATGAAGGTAATAACGTCAATTTTATTTATTTATTTTTTAAGACTTGGGATGGAGTGAATATCAGACAGCTACAAGGAAGGATTTAGAAGCAGGCCACTTGGCCACTTGGGATTTACTAGCCAGCAGACTCCCTGGCTAGTTGAGTGTGTGAGTGTTTGCCTGTAACTGTACCTGTACACATGCCTACTTGGTGGCCTAGGAGGCCAGAAGAAGGTGGTCAGATCTCCTGGAACTGGAGTTATAGGCGGTTGTGGGCCACCATCTGGGTCCTGGGATACTGAACCTGTGTCCTCTGCAAGAGCAGCAAGTGTTCTTAACGACTGAGCCATTTCTTCGGCCCTCTTTCTTCAATTCTCCATTGTCCTGCTAGAAGGCAGAATGACTTCGTCGACAACCTCATGCAGGAGTGGAACCAATCTCCTTCCCCGTGGGTGGCTGGGCATGTAGCTTCCTCTTTCTGTCTTGAGTGTTGCCAAGGAAAAGGGGCTGCAGATCTCCCCTGGATTGCAGAGTGGGAGACAAAGCAAGGGCCCCAGAAGAGCTCTCTGGATGCTCCTGGCTACTGAATCAACCGCAGAGCGCCCTCTGGGGCTGGGGTCTGACACTGTTACCCCTCCTGGCCTTATGGACGCAGATCCAGCTCAGCCTCACAATGAATTCAATGGTTCCTGAAAGCTTGTGCTCGGCCTGCCCACCTTCATCCACAGGGCAACATGGGAGCCAGACTTCTCTCTGTGGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591:ENSMUST00000154305:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types