HsaINT1014125 @ hg38
Intron Retention
Gene
ENSG00000128683 | GAD1
Description
glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]
Coordinates
chr2:170836793-170844157:+
Coord C1 exon
chr2:170836793-170836883
Coord A exon
chr2:170836884-170844044
Coord C2 exon
chr2:170844045-170844157
Length
7161 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TCTTCTTACCACCTTTCCAGGTT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTCATCCTCGATTTTTCAACCAGCTCTCCACTGGATTGGATATTATTGGCCTAGCTGGAGAATGGCTGACATCAACGGCCAATACCAACAT
Seq A exon
GTAAGTCTCATATGTTTTCATATAAGCAACCCTGATGTATGACTATGGCTTGTTGCTTTAAAAGTTCAGTCCCAGTGGTTCTATTTTATTAAAGTTTCCCTGGTCATTTTTTCTCTTAAAATCTTTAGGTTTATCACAGTTCTGATTTAATGGTAAATACTTGATAAACTATTGTTGAATTTAATAATGGAATTTAAGGAAAGCATGGTCATGAGAAATAATAACTCTAACTTCCAAAATGTAGTCTTGAAATTTCATGTTAAAAGACCCATTTCTGTTAATGGTGTATCTAAAGAGGTTATGTTTTGAGGTATGATCTTGGTTTTACCTTTTTCCACCCAAGCACATTGGTCCTTATCATTTAGGTCATGTTTCTTCCATAATTAAAGCAGCCATAAACCCACAAACCAATTTGATCAACCTATTGCTTAACTAAAAATTCTAAAACAAAATTCAGCCGATACTGATACAGTATATATTCTTTTCAAAATAAGTGATTGTTTTTCTAAATGTGACATTTTTTCATACTTGTTTGTGTAGGCAAAGCCTTCCTTTGTTTCTAAGTTCTTGAAAATTTACACAAAACTGACTCTGAGGTCCTGTAGGGTATGGGGTAGAAGTACTACCTGGGTAGTCTTATAGCAATCATCCCAGATTTTCCTCTACATGCATGTGCCCTCTTTTAAGAAAATGTCAGATTACTAATCGATGGAGGGGCCATCAGAGTACTGCCTTTGCTCTCAACACTAATGACAATGTTTTACCAGTATCTATACATCCAGACAATGGCACTACATCCTATTAAAGTATCCAAAGGAAAATAACAAAACAAATATCTTATAATAATTTAAAAACAACTATATAAGAATTACATGGGTGTCCATCACTGTGGAAATATTCAGAAAATAGCCACTCACTTTTTAAGTTCATAGAAAAGTAGATTCCAAAAAATGAATTTAGGTAAAAGGGTAGTATTGCTTAAAATGAGAAAATCCATTTGATATCAAGATAGAACGTAAATTACTGAAGTTTAAGGTAGTCTGTTTTTCTTAAACTGCTCTCAGCCAGAAAACCTGAAGGGCATTTAAAATTATATAGTGACCCATATGTATTCTAAAGCTGTTTAATGCTGTGACTCAGAATACTTAACTATATTCAGAAAAGTTTCTATTAATTAAGGATTCCTGTTTTCTTGGCTAATTTAAAACAACAGTGACAAATTTTAAAGAGCAAATGTGACAAGTGAAGCCTCTGGTGGTAAAAAAGCATAAAAGATTAAACTGATTGAAAAACTAAAACGATGTTCATGCTCCCTGCTTGCAGGTCATGGTTAGCTTCACAGACTGTCCATGTTGGGTCACTGAGATTTGGAAGAGCCAAGAGGAATACAGGTCAAAGATACAGTTGCTTGGAATTTGAACAAAAAGCTCCATTTAGCAATCTTTACTGTACTGTGATTTTTGAGATAAAAATATACCAGCCAGCACAGACATCATAGTAGAGTTAATTATAACTTGAGAAAAGACACTAATGTTTAATTGTAGTATCTAGCACTAAGGAACAATTTAAATTAGGAAATATAGTTGTTGTTTTTAACTCAACCATTTGGAAAATAAGTGAGGAAAACAGAGTAAAAGATACATATCTATTAAAGTCCAAGTACCCATATTAATACAAGCACTGAATTTACTCAGCACCTTTAAGTGTGTGTTCTGCAGGGCACTCAGCTGCTTTTTCCATGTATATATATGTCTCCAATCTCAAGGTAAATAACGGACCTCCCCCCTTTCAACCACTTATGACCAGATATTCCTAAACCAGAAAAATCCCACAAATTCTCCTTTTTTGGCATGTGTTCATAAAACCAAAGTCCCTTACTCTTCTCTTAGCTCAGCTGCAAAACACTAAAATGTGTCCCAGCCATCTGAGGTCAAGGCCAATCCAACTAAATGACATGTAGTAATTGCAGCTGTACTTGAATGGGAGATATTTATAAAATATGACCGATTCCAACAGATCGATAGAGAAGGTTATTTAAAATAGCAAAATAGTTTCTGTCAGTTCTGGAGACAAGGCATTGTCTGAAGAAGCAATAACTATTATCTAGAAATTGTTCTAAGCCAGTTGCCCTGGAAGATCATGAAATGTGGCAGCACTGTCAGGAGCTGAGGCAAAATTTGCTCCCTTGTGACAATTCCTTCTCCAGTCGGGAACAGTGTTCAAAATAAGTCTGGGAAAGAATGGCAAAAGGATCTTTCTATGGCAGTGCAGGATTTATTTAGTGATAATGCCTGGTTTTTGGTCCTGTACTCTCATTGAATTTAGGTGGCACCTGACATAGAAAATAAGAACTATATTCCTCAGTCATAGCCTCTTAAAAAGAACGATCCAATAACCTGACACAGGTGCAAAGTGCAAGGTGTCTGACTATTAGAATAGAAAGATGGTAGGTTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGATGGGTCACCTAAAATGGGAGTTCGAGGCCAGCCTGGCCAACATGGTGAAACTCCATGTCTACTAAAAACACAAAAATGAGCCGGGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAGCCTGGGAGGTAGAGGTTGCAGTGAGCTGAGACTATGCCACCGCACTCCAGCCCGGGCGACAGAACGAGACTCCATCTCAAAAAAAAAAAAAAAAATCTATGTCCATGCCTTTACACCTGTTTCTGCACATAGCTGTGCAGTATATTCTTCTTCTAAGCAACGACCCAGTGAAGATCCAAACAAAAGTTCACAAATATGTAGTTATCCAAGGCACATACAGCTCTTTTCTTCCAGAACAGGGCCACCAAGCACAATTGCGCAGGTAGGGCCCGAGTGTAAACAACAGCCTGCCCTCAAACATCTAATGGCAATACATAATCTTAATGGCAAGATCTATCATAACCCTTTGCTATGAGGTTATGATTTCAAGTATCTAGCACTTTATTTTCATAGAAAATATCCAGGAGAAATTCTCTATGGGAGTTATTCATCATTTTACACCACCGGGCAGGTCATTAGATAGGAGCCTGCAGTAAGCAGTTCTCGTTTGTCATGGAAAAGCAGCTGTGACATAGACTTGGAATTCTGCTTAAACACACTAACTCGGAGATCTTAAAACAAACCACTGAATTTCTCTGAACCTCAGTTTTCTCATCAGGAAAATGGAGGATAATAGTATCCATCCTACAGAGTGGTTCTGAAGACTAAAAATGGCTCCAGTCCTAAGTGCCTAGCGTATACAAGGTACAGTGTTTGCACCTAGGAAAGGCAACCACCGCACAGTCACTGTTGCTATTTGAGACTTTCCTGACTCTTTTATTTCTGTCTCTCATCATCTGGACAGTAGAGTGTTTCCCTAAGCTCCCCTCAGCTATGTTACCTTTTAAGGTGAAGATGTACTACCTGCCACATCTGTAAGGAGAAGTCAAGAGGAGTATCAGGATAGAGTCAGCATGGAAGATTATTTCTCTCATTAAAGAAGTTCCCAGTTTGACAGTCACCAGGGATCCAGATTTTGTGTGCCTTTCTAATCCCTATTGTAGCACATGGCTCCCATCCTCAAAGTTGCATTATGGTGCAGCCTGGCTGCTGGAGCTCCAGCCATCACTCCGGTGTTCCAGAACTCAGAAAGGAAGGGAGGGAGGGAGGAAGGGAGGAAGGGAGGAAAGGAGGGAGGTAGGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGGGCAAAAGAGACATACTCCTCTTTGATTAAAAAAAAATTAAAAAAAAAACCTTCTCAGAGGTCTCACACATTTCCATAAAGCCTCTTTAGCCAGAACTTAGTCCAAGACCACACCAAAAAAGGGTAGAAAATATAGTCTTCGATCAGAGTGAACAGCAACCCTAAATAAAATTTAACAAAGCAAGGGAAAATTGATATGGGTAGCAACAAGCAGACTCTGCCACACAAGAACTACAGCTTGTTGACAGTCAATTTGCCTTCGCTCTGAGTGAACTCCTCCGGGAAGGTGAGTTGAACCACTGCAAAAGGGCTGACTCACTTCCCTACTCGGAATATAGACATGCTCAGAATGCTCCTCTAGTGTCACTCCATGAATGCCACCATCCTACTGTTTTAAATCTTTACTTCCAATCCCATGTTCTTATGCTTCAACCCAGAGCTTCTGGCAGGTTTAGTTTCTGGTTCTGACTCTGAAATGTAATCTTGTACTTTGACTTTAGCATCTAACCAGCTTCTTCTGAATTCATATTTGACCTTTGATCTCTTGACTTCATTTGCTTTCCTCAGTCATTTAGGAAAACAGTACCCAACCTGGAATCTAGGTTGCAAGAGAAGAATCTCCTATAGTTCTATACAAAATGATGTGCCTATCTTCATTTTTTACTTGGAGAGAAGGACTACAGATTTCCTAGGATTCCCAAAGGGATCTGTAATCCCAATTAGGTGAAGAACCACTGGGCATGGTGGCTCACAACTGTAATCTCAGAACTTTGGGAGGCAAAGGCGGGAGGATCGCTTGAGGCCAAGAATTGAAGACCATCCTGGGCAATATAGTGAGACCTCCATCTCTACACAAAATAAAATAAAATAAAGTTAAAAATAAGAAATTTTTAAAAACTGCTTTGGTGAACTACAAGGCCTTCTTTAAGAGTGCAGCTGCACAGATTGTAAACATGGCCCAGGATGGGGCAGCAGGGTCAGAAGAAGTGTCAGGAATGAAGAACACCATGTCAGCCCATTTGTCAGGCCTGGCTGTGGATCAGCAGCCATGGACTGATATACTAGCTTTCAGGAGAGAGTGTCAGGCCTAAGCTAATAAGTCAGGAAAAGAGTGGAAAATTGGTCCTTTAGACTCAGGCAGGGACTATCAAACAGGATACAGCTAAGGCCAAGAACCAGATGCTAGAATCATCCTAGTAGGTTTCCTCCTCAAGGTTGAGAATGGTGTCTTCTAATATCTTAGTTTCCTTAGTACATAGGATGTCACCTGGCAGAGAATAGCCACTCAGTAAGTATTTGTTGAATAGAACTGAAAGAAAGTTTAGGAATCAGGTACCTGGCATAGATAAGGAACCTGAAATAGATTAGATCAGTTAAGCTCATGATAAACTCTCTAGACTCTTCCTCCTAATCCTGAGAGTAATGGCCATGTTCCTGGTCCTTGGGGAGGCTAATTCATGCAAACCTTGGGCCTAATTGGTTTTAAATCTGAAGCATGGAGTGGGACCTATGCCTGATATTCAGTCCCATTCCCTCTCCCTTGTCCATGTGGTTCCTGCCTGGCCAACACTGACTTGATCCTAAGCCAACTTTCATCCAGTCTTTGATATGGTTCTGATATTACGGTATGTGATTTCATTTGTTCCTTGCCTTACCCCAGAGAGCTTTCTTATATAGTACTGGGAGATTCTAGCACAGACACTGCCACCAGTATCTCCTCGCCATGCAAACATTTTTGTCATGTCAACATTTCCAAAAACCAGTGGAACCATTAATAACACATTTGTTCAAGAATGGTTAAAAGCCCATCATGAGTTTGCCTCTTGGTACACTTGGCAGCACAGGCTAAACCAGGAATCCTTCTCTTCTTCTTCCTTTATCAGGCCATCAGACATGAGGGAGTGTTGGTTGCTACGGTGATGGGGCTCAGAGCAGAACCAAAGCATGATTGTGACCTCCAGAGGTGATGGTAACTGCACACATGGTTTCCAAGGGTCTTCCTCCTAAATTTCCAGGGGCCTCCCAAGGAAAATGGACATATTCTTTTTGGAAATAAAATACTTCTACCAACATATCTGAGGATCCTTCAGGATCTTTTTGTCTTCTTTTACCTCCATGTGATTAATTTGACTGCTTTTTTCATCCACAATTAAAACTTAGTAGCTTCACCTGTGTCTTATGTAAAACAATAGTTATCTCATCCTTACAAATAGCTTTGCCTTACATTAAGCAAGCAAGAATTCCCATTAGTCTTCAACATTAGCACTTGGCTCAAACACCCTAACCAGTGATAAAGCTTCCCCATGTCACTTAGCTGAGTCAGTCTAGGCATCTCTTTTCGGTGAGGATGATCTGAGCCCAGCCTACAGACTCTAATGCTAAAGAATGCCAAGCAAAAACAAGAAAGACAAAAAGCCTCAGAGCTTAGTAAATATCTTTTTGTTTTCTGGCTTAATTTTCTGTGGACAGACCTTCCTTGATTTTTCTTAGGCCCCACGTTTGGTCTCACGATCTTGTTTCAATGACTAGTCTACCAGACTATGCCTCTGTGTTGAATTGCTTTGAAAAGAGCATGGCTTGCTACTTTTAAATCAGTTTCTTAGAAGACAAATGTAACCTTCCAAGATATCTGATGCCCACAGCTAGTTGTTTATGCCAGTTGACCGTCTTCTTGTTATTTATAATTTGTAATTAGAAAATCATCACTTAGAATTATTCTTGACAGATATTGACTTCAGAGAATTATAGAAACATAGCTGTCCTTGAGGATTATTACAGAAAAACCATGTAGATAATTATATTGAGATCTTTAAAACCTGGGTCAATATTTCCAATTATCTTCACAGTTAGCCTTCAGATGTTTACATTATTTTTAAAAGATAGACTTTGGCTCTGGCTTTTATATATTCTACAAGTGTGAAACTGGCAGTCAGCTTTTTTTTTTTTTTTTTTAAACAAATTGTAAACCAATTTTACATAGAACTTGGAATGCTTTTTTCAATTAACATTTGCATTGTCCTATAATCTTAGAGGTAAAAGGGACTCAGAAAAGTCATTTTCTTTCCTTCTATTCCTCTGGGTGGACCATGCCTAAGACATTCCATTCAGATAAGAATCTATTTTGTTGGTGAAGTATCACAGGGCTGGCACTTCCACCACCTCTCTCAGTAACCCAGGCTGGTTTCTGACATTTTATGATCGGCGACTTAATGCATTTCCAGGAAATGAATCATGTTAGTGGTTTGGAACAGCTTTTTTTTAGAACCCAACTACAAATACTAAACCAATCCTCTGTGTTCCTAAAATAAGTGGTTTGACTTCTTTATTTTCTTTCATCCTTCTTCTTACCACCTTTCCAG
Seq C2 exon
GTTTACATATGAAATTGCACCAGTGTTTGTCCTCATGGAACAAATAACACTTAAGAAGATGAGAGAGATAGTTGGATGGTCAAGTAAAGATGGTGATGGGATATTTTCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128683:ENST00000358196:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0028214=Pyridoxal_deC=FE(39.5=100)
A:
NA
C2:
PF0028214=Pyridoxal_deC=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains